Variant report

Variant	rs528203420
Chromosome Location	chr11:65776707-65776708
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65769812..65778104-chr11:65786537..65794453,15	K562	blood:
2	chr11:65728544..65730713-chr11:65775327..65777524,2	K562	blood:
3	chr11:65682118..65684018-chr11:65775122..65778045,2	MCF-7	breast:
4	chr11:65727829..65730713-chr11:65776024..65777968,2	K562	blood:
5	chr11:65775918..65778029-chr11:65787513..65790456,2	MCF-7	breast:
6	chr11:65774068..65777028-chr11:65792820..65794659,2	MCF-7	breast:
7	chr11:65725324..65726831-chr11:65776264..65777958,2	MCF-7	breast:
8	chr11:65775333..65777143-chr11:65814393..65815931,2	K562	blood:
9	chr11:65776357..65777958-chr11:65817705..65819655,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175294	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
7	nsv825952	chr11:65776517-65779832	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65771000-65779000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:65771000-65779000	Weak transcription	Aorta	Aorta
3	chr11:65771200-65779000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:65771200-65779200	Weak transcription	Right Atrium	heart
5	chr11:65772200-65778800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:65772200-65779200	Weak transcription	Gastric	stomach
7	chr11:65772200-65779400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:65772200-65779400	Weak transcription	Psoas Muscle	Psoas
9	chr11:65772400-65778200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:65772600-65777200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:65772600-65778400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:65772800-65779200	Weak transcription	Right Ventricle	heart
13	chr11:65773000-65776800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:65773200-65776800	Weak transcription	NHDF-Ad	bronchial
15	chr11:65773200-65778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:65773200-65778200	Weak transcription	NH-A	brain
17	chr11:65773200-65779000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:65773200-65779200	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:65773400-65777600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:65773400-65778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:65773400-65779000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:65773400-65779000	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:65773400-65779000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:65773400-65779000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:65773400-65779400	Weak transcription	Ovary	ovary
26	chr11:65773400-65780200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:65773600-65777000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:65773600-65777000	Weak transcription	Liver	Liver
29	chr11:65773600-65778600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:65773600-65778800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:65773600-65778800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:65773600-65778800	Weak transcription	Osteobl	bone
33	chr11:65773600-65779200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:65773800-65777800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:65773800-65778800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:65773800-65779000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:65774000-65777000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:65774000-65777200	Weak transcription	Primary B cells from cord blood	blood
39	chr11:65774000-65777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:65774000-65777400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:65774000-65778000	Weak transcription	Fetal Lung	lung
42	chr11:65774000-65779000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:65774000-65779200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:65774200-65777200	Weak transcription	Adipose Nuclei	Adipose
45	chr11:65774200-65777400	Weak transcription	Brain Germinal Matrix	brain
46	chr11:65774200-65778000	Weak transcription	Primary T cells from cord blood	blood
47	chr11:65774200-65778200	Weak transcription	Pancreas	Pancrea
48	chr11:65774200-65778800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:65774400-65776800	Enhancers	HMEC	breast
50	chr11:65774400-65777200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links