Variant report

Variant	rs528216614
Chromosome Location	chr14:20664214-20664215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:38)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:38 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:20664206-20664358	SK-N-SH_RA	brain:	n/a	n/a
2	CTCF	chr14:20664160-20664310	MCF-7	breast:	n/a	n/a
3	CTCF	chr14:20664194-20664358	MCF-7	breast:	n/a	n/a
4	CTCF	chr14:20664213-20664339	HepG2	liver:	n/a	n/a
5	CTCF	chr14:20663911-20664541	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr14:20664140-20664290	HMEC	breast:	n/a	n/a
7	CTCF	chr14:20664180-20664330	K562	blood:	n/a	n/a
8	CTCF	chr14:20664080-20664230	HCT-116	colon:	n/a	n/a
9	CTCF	chr14:20664200-20664350	NB4	blood:	n/a	n/a
10	RAD21	chr14:20664137-20664367	HepG2	liver:	n/a	n/a
11	RAD21	chr14:20664137-20664375	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr14:20664160-20664310	HEK293	kidney:	n/a	n/a
13	CTCF	chr14:20664200-20664350	HCFaa	heart:	n/a	n/a
14	CTCF	chr14:20664148-20664387	K562	blood:	n/a	n/a
15	RAD21	chr14:20664090-20664435	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr14:20664160-20664310	HL-60	blood:	n/a	n/a
17	CTCF	chr14:20664184-20664356	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr14:20664192-20664359	HepG2	liver:	n/a	n/a
19	CTCF	chr14:20664177-20664360	LNCaP	prostate:	n/a	n/a
20	CTCF	chr14:20664180-20664330	HRPEpiC	eye:	n/a	n/a
21	RAD21	chr14:20664167-20664371	ECC-1	luminal epithelium:	n/a	n/a
22	CTCF	chr14:20664200-20664350	GM12873	blood:	n/a	n/a
23	CTCF	chr14:20664200-20664350	GM12865	blood:	n/a	n/a
24	CTCF	chr14:20664160-20664310	HPF	lung:	n/a	n/a
25	CTCF	chr14:20664119-20664447	GM12878	blood:	n/a	n/a
26	RAD21	chr14:20664064-20664478	SK-N-SH_RA	brain:	n/a	n/a
27	RAD21	chr14:20664147-20664405	MCF-7	breast:	n/a	n/a
28	CTCF	chr14:20664200-20664350	GM12864	blood:	n/a	n/a
29	CTCF	chr14:20664180-20664330	SK-N-SH_RA	brain:	n/a	n/a
30	CTCF	chr14:20664120-20664270	HepG2	liver:	n/a	n/a
31	CTCF	chr14:20664173-20664381	LNCaP	prostate:	n/a	n/a
32	CTCF	chr14:20664001-20664467	MCF-7	breast:	n/a	n/a
33	SMC3	chr14:20664127-20664388	Hela-S3	cervix:	n/a	n/a
34	CTCF	chr14:20664180-20664330	Hela-S3	cervix:	n/a	n/a
35	RAD21	chr14:20663950-20664618	SK-N-SH	brain:	n/a	n/a
36	CTCF	chr14:20664209-20664369	MCF-7	breast:	n/a	n/a
37	CTCF	chr14:20664182-20664339	SK-N-SH_RA	brain:	n/a	n/a
38	CTCF	chr14:20664078-20664471	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
OR11G2	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901299	chr14:20191869-20756887	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2751268	chr14:20203125-20716841	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
4	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
5	nsv563812	chr14:20404091-20694968	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1043938	chr14:20427182-20776276	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv541971	chr14:20427182-20776276	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv563829	chr14:20445370-20694968	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
10	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
11	nsv1037890	chr14:20537751-20669240	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2761819	chr14:20577698-20677591	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv832739	chr14:20604126-20734222	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv977615	chr14:20643351-20673001	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	esv3384183	chr14:20647423-20665695	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv901466	chr14:20656645-20707100	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20663200-20664600	Enhancers	K562	blood
2	chr14:20664200-20666400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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