Variant report

Variant	rs528259455
Chromosome Location	chr14:22236057-22236058
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:22236000-22236150	HA-sp	spinal cord:	n/a	n/a
2	CTCF	chr14:22236021-22236935	A549	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
3	CTCF	chr14:22235980-22236130	BE2_C	brain:	n/a	n/a
4	CTCF	chr14:22236040-22236190	HMEC	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:22236018-22236068	H1-hESC	embryonic stem cell:	embryo
2	chr14:22236018-22236068	HAEpiC	amniotic membrane:	n/a
3	chr14:22236018-22236068	AG04450	lung:	fetal
4	chr14:22236018-22236068	SKMC	muscle:	n/a
5	chr14:22236018-22236068	T-47D	breast:	n/a
6	chr14:22236018-22236068	SK-N-SH	brain:	n/a
7	chr14:22236018-22236068	PANC-1	pancreas:	n/a
8	chr14:22236018-22236068	RPTEC	kidney:	n/a
9	chr14:22236018-22236068	CMK	blood:	n/a
10	chr14:22236018-22236068	AG09309	skin:	n/a
11	chr14:22236018-22236068	HRE	kidney:	n/a
12	chr14:22236018-22236068	AoSMC	blood vessel:	n/a
13	chr14:22236018-22236068	HNPCEpiC	eye:	n/a
14	chr14:22236018-22236068	SK-N-SH_RA	brain:	n/a
15	chr14:22236018-22236068	IMR90	lung:	fetal
16	chr14:22236018-22236068	HMEC	breast:	n/a
17	chr14:22236018-22236068	SK-N-MC	brain:	n/a
18	chr14:22236018-22236068	GM12878	blood:	n/a
19	chr14:22236018-22236068	GM12892	blood:	n/a
20	chr14:22236018-22236068	SAEC	small airway:	n/a
21	chr14:22236018-22236068	HRCEpiC	kidney:	n/a
22	chr14:22236018-22236068	ECC-1	luminal epithelium:	n/a
23	chr14:22236018-22236068	GM12891	blood:	n/a
24	chr14:22236018-22236068	MCF10A-Er-Src	breast:	n/a
25	chr14:22236018-22236068	GM19239	blood:	n/a
26	chr14:22236018-22236068	BJ	skin:	n/a
27	chr14:22236018-22236068	AG10803	skin:	n/a
28	chr14:22236018-22236068	HEK293	kidney:	embryo
29	chr14:22236018-22236068	GM06990	blood:	n/a
30	chr14:22236018-22236068	HCPEpiC	choroid plexus:	n/a
31	chr14:22236018-22236068	AG04449	skin:	fetal
32	chr14:22236018-22236068	HCT-116	colon:	n/a
33	chr14:22236018-22236068	AG09319	gingival:	n/a
34	chr14:22236018-22236068	Caco-2	colon:	n/a
35	chr14:22236018-22236068	ovcar-3	ovarian:	n/a
36	chr14:22236018-22236068	LNCaP	prostate:	n/a
37	chr14:22236018-22236068	NHDF-neo	bronchial:	n/a
38	chr14:22236018-22236068	A549	lung:	n/a
39	chr14:22236018-22236068	ProgFib	skin:	n/a
40	chr14:22236018-22236068	NH-A	brain:	n/a
41	chr14:22236018-22236068	NT2-D1	testis:	n/a
42	chr14:22236018-22236068	HUVEC	blood vessel:	n/a
43	chr14:22236018-22236068	K562	blood:	n/a
44	chr14:22236018-22236068	HL-60	blood:	n/a
45	chr14:22236018-22236068	NHBE	bronchial:	n/a
46	chr14:22236018-22236068	HIPEpiC	eye:	n/a
47	chr14:22236018-22236068	HCF	heart:	n/a
48	chr14:22236018-22236068	HCM	heart:	n/a
49	chr14:22236018-22236068	Hepatocyte	liver:	n/a
50	chr14:22236018-22236068	PrEC	prostate:	n/a

No data

Variant related genes	Relation type
TRAV6	TF binding region
TRAV6	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563852	chr14:22205447-22344160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv528996	chr14:22220569-22242293	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901480	chr14:22221211-22255090	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1037902	chr14:22229021-22354103	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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