Variant report

Variant	rs52827085
Chromosome Location	chr5:7757647-7757648
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:7753509..7758357-chr5:7765336..7768777,4	K562	blood:
2	chr5:6711289..6713924-chr5:7756144..7757993,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11738284	1.00[AFR][1000 genomes]
rs11739527	1.00[AFR][1000 genomes]
rs11749024	1.00[AFR][1000 genomes]
rs34172797	1.00[AFR][1000 genomes]
rs35890938	1.00[AFR][1000 genomes]
rs41283147	1.00[AFR][1000 genomes]
rs6859960	1.00[AFR][1000 genomes]
rs6864295	1.00[AFR][1000 genomes]
rs6868871	1.00[AFR][1000 genomes]
rs6874544	1.00[AFR][1000 genomes]
rs6875417	1.00[AFR][1000 genomes]
rs6875449	1.00[AFR][1000 genomes]
rs6876840	1.00[AFR][1000 genomes]
rs6879300	1.00[AFR][1000 genomes]
rs7722483	1.00[AFR][1000 genomes]
rs7725672	1.00[AFR][1000 genomes]
rs7727993	1.00[AFR][1000 genomes]
rs9282788	1.00[AFR][1000 genomes]
rs9282790	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1024268	chr5:7707047-7821303	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7711000-7783600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:7719000-7768800	Weak transcription	Brain Anterior Caudate	brain
3	chr5:7719000-7785000	Weak transcription	Aorta	Aorta
4	chr5:7728000-7757800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:7741800-7763800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:7745400-7759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:7747800-7766400	Weak transcription	Fetal Brain Female	brain
8	chr5:7749200-7771000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:7750200-7757800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:7752800-7766400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:7755000-7781800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:7755200-7781800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:7755400-7763800	Weak transcription	Pancreas	Pancrea
14	chr5:7755600-7760200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:7755600-7789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:7755600-7794200	Weak transcription	Ovary	ovary
17	chr5:7756000-7759000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:7756200-7759600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:7756400-7799600	Weak transcription	Fetal Intestine Small	intestine
20	chr5:7756600-7759400	Weak transcription	Psoas Muscle	Psoas
21	chr5:7756800-7758200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:7756800-7758200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:7757000-7758200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr5:7757000-7779200	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:7757400-7758400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:7757400-7759000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:7757600-7758400	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:7757600-7758800	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr5:7757600-7758800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:7757600-7759200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:7757600-7760000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:7757600-7760600	Strong transcription	Fetal Stomach	stomach

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