Variant report

Variant	rs528277234
Chromosome Location	chr11:85685237-85685238
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85683941..85685455-chr11:85694454..85696370,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv468769	chr11:85683554-85757589	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv555641	chr11:85683554-85757589	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
2	chr11:85663400-85692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:85663800-85740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:85664400-85687200	Strong transcription	Primary T cells from cord blood	blood
5	chr11:85664400-85693600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:85664400-85699800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:85664400-85726800	Strong transcription	Liver	Liver
8	chr11:85664400-85729000	Strong transcription	Placenta	Placenta
9	chr11:85664600-85693200	Strong transcription	Fetal Thymus	thymus
10	chr11:85664600-85730800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:85664800-85689400	Strong transcription	Primary B cells from cord blood	blood
12	chr11:85664800-85733000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:85665200-85742600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:85665200-85743000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:85665400-85699800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:85665600-85687800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:85665800-85699600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:85665800-85701200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:85665800-85711400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:85666000-85735800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:85666400-85693600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr11:85667800-85701800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:85667800-85712000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:85668000-85691400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:85669400-85686200	Strong transcription	Fetal Intestine Large	intestine
26	chr11:85670000-85715800	Weak transcription	Colonic Mucosa	Colon
27	chr11:85671800-85710600	Weak transcription	Psoas Muscle	Psoas
28	chr11:85672400-85685400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:85673200-85702800	Weak transcription	Small Intestine	intestine
30	chr11:85674000-85695200	Strong transcription	HSMM	muscle
31	chr11:85674000-85708600	Strong transcription	K562	blood
32	chr11:85674200-85715400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:85675000-85693200	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:85675000-85742600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:85675200-85700000	Strong transcription	GM12878-XiMat	blood
36	chr11:85675400-85693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:85675600-85693000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:85677800-85709600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:85678000-85690200	Weak transcription	Pancreas	Pancrea
40	chr11:85679200-85685600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:85679400-85688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:85679600-85687600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:85679800-85697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:85680000-85693600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:85680400-85685400	Weak transcription	Fetal Brain Male	brain
46	chr11:85680600-85731600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:85680800-85686000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:85680800-85686000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:85680800-85687200	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:85680800-85708400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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