Variant report

Variant	rs528299339
Chromosome Location	chr11:59536484-59536485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59534862..59537569-chr11:59577750..59579659,2	K562	blood:
2	chr11:59533196..59536602-chr11:59539532..59544445,5	MCF-7	breast:
3	chr11:59534794..59538075-chr11:59541360..59543900,3	MCF-7	breast:
4	chr11:59536179..59538749-chr11:59573920..59575586,2	K562	blood:
5	chr11:59527952..59530580-chr11:59535251..59538243,2	MCF-7	breast:
6	chr11:59535283..59538247-chr11:59566815..59570479,3	K562	blood:

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
2	esv3327231	chr11:59535476-59539774	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524000-59539200	Weak transcription	Liver	Liver
2	chr11:59524200-59545200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:59524400-59542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:59524400-59545600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:59524400-59557000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:59524600-59537200	Weak transcription	NHLF	lung
7	chr11:59524600-59538400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:59524600-59557400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:59524800-59539400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:59524800-59540600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:59524800-59543000	Weak transcription	A549	lung
13	chr11:59524800-59543800	Weak transcription	NH-A	brain
14	chr11:59524800-59553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:59524800-59555400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:59525000-59539000	Weak transcription	HUVEC	blood vessel
17	chr11:59525200-59537400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:59525200-59540600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:59525200-59543600	Weak transcription	Hela-S3	cervix
20	chr11:59525400-59540600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:59525400-59543400	Weak transcription	HMEC	breast
22	chr11:59525400-59551200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:59525600-59557800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:59526000-59541600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:59527800-59541800	Weak transcription	Fetal Stomach	stomach
26	chr11:59529400-59541000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:59530000-59540600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:59530400-59540600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:59530400-59540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:59530600-59538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:59530800-59540400	Weak transcription	NHEK	skin
32	chr11:59530800-59545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:59531000-59540200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:59531000-59541600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:59531600-59536800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:59532000-59539600	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:59532000-59543800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:59532600-59538200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:59532800-59537400	Enhancers	Primary B cells from cord blood	blood
40	chr11:59532800-59537400	Weak transcription	Esophagus	oesophagus
41	chr11:59532800-59537600	Enhancers	Primary T cells fromperipheralblood	blood
42	chr11:59533000-59537200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:59533000-59544000	Weak transcription	Psoas Muscle	Psoas
44	chr11:59533000-59545000	Weak transcription	Brain Substantia Nigra	brain
45	chr11:59533400-59536800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr11:59533400-59537800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:59533600-59536800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:59533600-59536800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:59533600-59537000	Enhancers	Primary hematopoietic stem cells	blood
50	chr11:59533600-59537200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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