Variant report

Variant	rs528310227
Chromosome Location	chr12:120394156-120394157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:120394020-120394170	HepG2	liver:	n/a	n/a
2	RAD21	chr12:120393941-120394172	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr12:120393974-120394170	K562	blood:	n/a	n/a
4	RAD21	chr12:120393887-120394224	HepG2	liver:	n/a	n/a
5	CTCF	chr12:120394040-120394190	HCPEpiC	choroid plexus:	n/a	n/a
6	CTCF	chr12:120393946-120394204	K562	blood:	n/a	n/a
7	RAD21	chr12:120393921-120394289	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr12:120394020-120394170	HMEC	breast:	n/a	n/a
9	CTCF	chr12:120394100-120394250	MCF-7	breast:	n/a	n/a
10	CTCF	chr12:120394020-120394170	NHDF-neo	bronchial:	n/a	n/a
11	KAP1	chr12:120393866-120394319	HEK293	kidney:	n/a	n/a
12	CTCF	chr12:120394080-120394230	MCF-7	breast:	n/a	n/a
13	CTCF	chr12:120394060-120394210	GM12873	blood:	n/a	n/a
14	CTCF	chr12:120393870-120394199	HepG2	liver:	n/a	n/a
15	CTCF	chr12:120394020-120394170	HEK293	kidney:	n/a	n/a
16	RAD21	chr12:120393893-120394168	HepG2	liver:	n/a	n/a
17	CTCF	chr12:120393882-120394195	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr12:120394020-120394170	A549	lung:	n/a	n/a
19	SETDB1	chr12:120393789-120394337	U2OS	brain:	n/a	n/a

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Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455727	chr12:120259679-120420670	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv560397	chr12:120259679-120420670	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv510575	chr12:120303163-120437490	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv3525916	chr12:120345352-120665045	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
5	esv3525917	chr12:120345352-120665045	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
6	nsv455728	chr12:120355563-120396295	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv560398	chr12:120355563-120396295	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv899554	chr12:120389613-120513625	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv973127	chr12:120391836-120402653	Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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