Variant report

Variant	rs528310678
Chromosome Location	chr7:99338048-99338049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99331906..99334521-chr7:99334977..99338227,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160870	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:99321800-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99324400-99339200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:99327200-99339200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:99331400-99338800	Weak transcription	Liver	Liver
8	chr7:99333600-99339600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:99334600-99338800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:99334800-99340800	Weak transcription	Pancreas	Pancrea
11	chr7:99335800-99338400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:99335800-99338400	Weak transcription	Adipose Nuclei	Adipose
13	chr7:99335800-99340000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:99335800-99340600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:99336600-99338400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:99336800-99339000	Weak transcription	Psoas Muscle	Psoas
17	chr7:99337000-99341800	Enhancers	HepG2	liver
18	chr7:99337200-99338400	Enhancers	NHEK	skin
19	chr7:99337200-99339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:99337200-99339800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr7:99337600-99338400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:99337600-99338400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:99337600-99339000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:99337600-99339000	Enhancers	Hela-S3	cervix
25	chr7:99337600-99339200	Enhancers	HSMM	muscle
26	chr7:99337600-99339400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:99337600-99339400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr7:99337600-99339400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:99337600-99339800	Enhancers	HSMMtube	muscle
30	chr7:99337600-99341000	Enhancers	Fetal Muscle Leg	muscle
31	chr7:99337800-99338600	Weak transcription	Lung	lung
32	chr7:99337800-99338800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:99337800-99338800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:99337800-99339000	Weak transcription	Aorta	Aorta
35	chr7:99337800-99339000	Weak transcription	Left Ventricle	heart
36	chr7:99337800-99340800	Weak transcription	Brain Angular Gyrus	brain
37	chr7:99338000-99339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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