Variant report

Variant	rs528340405
Chromosome Location	chr18:29477665-29477666
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29475912..29478004-chr18:29521825..29524429,2	MCF-7	breast:
2	chr18:29477012..29478929-chr18:29485217..29488181,2	K562	blood:

Variant related genes	Relation type
ENSG00000153339	Chromatin interaction
ENSG00000263823	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv820095	chr18:29477466-29481069	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29405600-29481800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
3	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:29431800-29499000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr18:29431800-29512600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr18:29432400-29480000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:29432600-29481600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:29432600-29507600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
10	chr18:29446000-29489000	Strong transcription	Fetal Thymus	thymus
11	chr18:29449200-29489000	Strong transcription	Adipose Nuclei	Adipose
12	chr18:29456000-29479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr18:29456000-29480000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr18:29457000-29480400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr18:29457000-29505800	Weak transcription	Brain Angular Gyrus	brain
16	chr18:29457200-29479600	Weak transcription	Colonic Mucosa	Colon
17	chr18:29457200-29493200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr18:29457400-29479800	Weak transcription	Pancreas	Pancrea
19	chr18:29457400-29484800	Weak transcription	NHEK	skin
20	chr18:29457600-29479800	Weak transcription	Right Ventricle	heart
21	chr18:29458200-29479600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:29458200-29479600	Weak transcription	Aorta	Aorta
23	chr18:29458200-29479600	Weak transcription	Esophagus	oesophagus
24	chr18:29458200-29482600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr18:29458600-29485200	Weak transcription	Brain Substantia Nigra	brain
26	chr18:29459000-29481400	Weak transcription	NHLF	lung
27	chr18:29460400-29501200	Strong transcription	Liver	Liver
28	chr18:29461400-29494200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr18:29461600-29491200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr18:29461600-29518600	Weak transcription	Psoas Muscle	Psoas
31	chr18:29462000-29520000	Weak transcription	Fetal Heart	heart
32	chr18:29462600-29479800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr18:29462600-29485800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr18:29462600-29489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr18:29462800-29485200	Weak transcription	Brain Germinal Matrix	brain
36	chr18:29462800-29486000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr18:29463200-29490200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr18:29463400-29509200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr18:29463600-29481600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr18:29463800-29477800	Weak transcription	Colon Smooth Muscle	Colon
41	chr18:29464400-29479600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr18:29464600-29477800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr18:29465000-29489200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr18:29465600-29480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr18:29466200-29486000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr18:29466200-29489000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr18:29466400-29490800	Strong transcription	Placenta	Placenta
48	chr18:29466600-29485800	Strong transcription	Dnd41	blood
49	chr18:29466800-29489000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr18:29466800-29489000	Strong transcription	Rectal Mucosa Donor 31	rectum

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