Variant report
| Variant | rs528351799 |
|---|---|
| Chromosome Location | chr1:152034842-152034843 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:152034269..152035066-chr1:152153200..152153993,2 | MCF-7 | breast: | |
| 2 | chr1:152032363..152034553-chr1:152034554..152037486,2 | K562 | blood: | |
| 3 | chr1:152034771..152037700-chr1:152041582..152044104,2 | K562 | blood: | |
| 4 | chr1:152025453..152028368-chr1:152034422..152037316,2 | MCF-7 | breast: | |
| 5 | chr1:151963478..151966164-chr1:152034613..152037123,3 | MCF-7 | breast: | |
| 6 | chr1:152033820..152035009-chr1:152157797..152158750,5 | MCF-7 | breast: | |
| 7 | chr1:152034141..152035088-chr1:152154621..152155465,4 | MCF-7 | breast: | |
| 8 | chr1:152033237..152035148-chr1:152105108..152107220,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197747 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007097 | chr1:151832796-152227977 | Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 196 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012327 | chr1:151835544-152200890 | Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 196 gene(s) | inside rSNPs | diseases |
| 3 | nsv535159 | chr1:151835544-152200890 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 196 gene(s) | inside rSNPs | diseases |
| 4 | nsv547853 | chr1:152008671-152236760 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 83 gene(s) | inside rSNPs | diseases |
| 5 | nsv535160 | chr1:152031280-152050179 | Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
