Variant report

Variant	rs528353137
Chromosome Location	chr5:179392289-179392290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:179391972..179394797-chr5:179396754..179398934,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
2	nsv1030437	chr5:179235423-179649944	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
3	nsv537982	chr5:179235423-179649944	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
4	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
5	nsv830561	chr5:179365637-179537012	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
6	esv3412320	chr5:179391746-179395144	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179370200-179392800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:179373400-179400600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:179373800-179401600	Weak transcription	Colonic Mucosa	Colon
4	chr5:179375400-179392600	Weak transcription	Fetal Kidney	kidney
5	chr5:179376600-179406600	Weak transcription	Psoas Muscle	Psoas
6	chr5:179380000-179392600	Weak transcription	NH-A	brain
7	chr5:179380000-179410800	Weak transcription	Small Intestine	intestine
8	chr5:179380200-179401200	Weak transcription	Esophagus	oesophagus
9	chr5:179380400-179393600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:179381000-179397000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:179381000-179397200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:179381000-179407800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:179381200-179396600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:179381200-179397200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:179381200-179402200	Weak transcription	Fetal Heart	heart
16	chr5:179381200-179405600	Weak transcription	NHLF	lung
17	chr5:179381600-179393600	Weak transcription	Osteobl	bone
18	chr5:179381600-179411800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:179381800-179392600	Weak transcription	HSMM	muscle
20	chr5:179381800-179402200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:179382000-179392600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:179382000-179401400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:179382200-179401400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:179382800-179400600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:179383200-179394600	Weak transcription	Stomach Mucosa	stomach
26	chr5:179383200-179408600	Weak transcription	A549	lung
27	chr5:179384000-179394400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:179385200-179397600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:179386000-179401000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr5:179386800-179397600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:179386800-179397600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:179387400-179395800	Weak transcription	K562	blood
33	chr5:179387800-179397000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr5:179387800-179397000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr5:179388000-179393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:179388000-179394000	Strong transcription	Left Ventricle	heart
37	chr5:179388000-179395000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:179388000-179397200	Strong transcription	Adipose Nuclei	Adipose
39	chr5:179388000-179397400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr5:179388200-179393000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr5:179388200-179394400	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:179388200-179394800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:179388200-179394800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr5:179388200-179396400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr5:179388200-179397400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr5:179388200-179397600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:179388400-179394400	Strong transcription	Primary B cells from cord blood	blood
48	chr5:179388400-179397200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr5:179388400-179397200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr5:179388600-179394400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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