Variant report

Variant	rs528359176
Chromosome Location	chr3:43047028-43047029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43043600-43054400	Weak transcription	Placenta	Placenta
2	chr3:43043800-43054600	Weak transcription	Fetal Kidney	kidney
3	chr3:43044200-43049800	Weak transcription	Ovary	ovary
4	chr3:43044600-43047400	Weak transcription	Liver	Liver
5	chr3:43044600-43052200	Weak transcription	Fetal Stomach	stomach
6	chr3:43044800-43051800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:43045600-43047200	Enhancers	HMEC	breast
8	chr3:43046000-43047400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:43046600-43049000	Weak transcription	Fetal Thymus	thymus
10	chr3:43046600-43053000	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:43046800-43047600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:43046800-43048000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:43046800-43048200	Enhancers	Primary T cells from cord blood	blood
14	chr3:43047000-43047400	Weak transcription	Brain Substantia Nigra	brain
15	chr3:43047000-43047800	Enhancers	Thymus	Thymus
16	chr3:43047000-43048600	Enhancers	Brain Anterior Caudate	brain
17	chr3:43047000-43049600	Enhancers	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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