Variant report

Variant	rs528368288
Chromosome Location	chr2:116052289-116052290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv964349	chr2:116051086-116054027	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116050800-116054000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:116051200-116054000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:116051200-116054200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:116051400-116053400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:116051400-116054200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:116051600-116052400	Enhancers	Brain Angular Gyrus	brain
9	chr2:116051600-116052800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:116051600-116052800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:116051600-116053200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:116051600-116053200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:116051600-116053200	Enhancers	Brain Hippocampus Middle	brain
14	chr2:116051600-116053400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:116051800-116052600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:116051800-116053200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:116051800-116053400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:116052200-116052800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:116052200-116052800	Enhancers	Brain Germinal Matrix	brain
20	chr2:116052200-116053000	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links