Variant report

Variant	rs528472852
Chromosome Location	chr3:160286821-160286822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:160286366-160287084	MCF-7	breast:	n/a	n/a
2	CTCF	chr3:160286742-160286822	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160281906..160285341-chr3:160285654..160289811,8	MCF-7	breast:
2	chr3:160282613..160284767-chr3:160285868..160288833,4	MCF-7	breast:

Variant related genes	Relation type
KPNA4	TF binding region
ENSG00000186432	Chromatin interaction
ENSG00000229320	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
5	nsv877702	chr3:160262803-160304614	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
6	nsv4089	chr3:160284848-160330024	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv963373	chr3:160285741-160287108	ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160284200-160289600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:160284600-160287000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:160284600-160288400	Weak transcription	Ovary	ovary
4	chr3:160284800-160287200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:160284800-160287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:160284800-160287600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:160284800-160287800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:160284800-160288200	Weak transcription	Brain Substantia Nigra	brain
9	chr3:160284800-160288400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:160284800-160289600	Weak transcription	Fetal Lung	lung
11	chr3:160284800-160292000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:160284800-160295000	Weak transcription	Stomach Mucosa	stomach
13	chr3:160284800-160295200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:160285000-160287000	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:160285000-160287200	Weak transcription	GM12878-XiMat	blood
16	chr3:160285000-160287400	Enhancers	Dnd41	blood
17	chr3:160285000-160287800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:160285000-160287800	Weak transcription	Liver	Liver
19	chr3:160285000-160289600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:160285000-160290800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:160285000-160292200	Weak transcription	Primary B cells from cord blood	blood
22	chr3:160285200-160287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:160285200-160287600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:160285200-160287600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:160285200-160287800	Weak transcription	Psoas Muscle	Psoas
26	chr3:160285200-160288000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:160285200-160289600	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:160285200-160293400	Weak transcription	HepG2	liver
29	chr3:160285200-160294400	Weak transcription	HSMMtube	muscle
30	chr3:160285200-160298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:160285400-160288000	Weak transcription	NHDF-Ad	bronchial
32	chr3:160285400-160288400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr3:160285600-160287000	Strong transcription	Placenta	Placenta
34	chr3:160285600-160287200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:160285600-160287200	Strong transcription	Fetal Intestine Small	intestine
36	chr3:160285600-160287200	ZNF genes & repeats	Fetal Stomach	stomach
37	chr3:160285600-160287400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:160285600-160287400	Weak transcription	Hela-S3	cervix
39	chr3:160285600-160287400	Weak transcription	HUVEC	blood vessel
40	chr3:160285600-160289200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr3:160285800-160287000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:160285800-160287000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:160285800-160287000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:160285800-160287000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:160285800-160287000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:160285800-160287000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:160285800-160287000	Strong transcription	Gastric	stomach
48	chr3:160285800-160287200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:160285800-160287800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:160285800-160288800	Weak transcription	NHEK	skin

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