Variant report

Variant	rs528547289
Chromosome Location	chr3:99586228-99586229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99583225..99585048-chr3:99585235..99587325,2	K562	blood:
2	chr3:99584236..99588094-chr3:99589040..99591682,4	MCF-7	breast:
3	chr3:99574024..99577676-chr3:99581622..99586745,5	K562	blood:
4	chr3:99584410..99586958-chr3:99739042..99741066,2	K562	blood:
5	chr3:99563302..99565936-chr3:99585256..99586921,2	K562	blood:
6	chr3:99582343..99586390-chr3:99587207..99589734,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv980067	chr3:99585666-99590644	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99537200-99594400	Weak transcription	Esophagus	oesophagus
2	chr3:99563200-99593600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:99565600-99589400	Weak transcription	K562	blood
4	chr3:99569000-99589600	Weak transcription	Colonic Mucosa	Colon
5	chr3:99573200-99594000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:99573400-99589200	Genic enhancers	HepG2	liver
7	chr3:99574400-99590000	Weak transcription	Liver	Liver
8	chr3:99575000-99587000	Weak transcription	Pancreas	Pancrea
9	chr3:99575000-99593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:99575200-99587000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:99576000-99587600	Genic enhancers	NHDF-Ad	bronchial
12	chr3:99577400-99587200	Weak transcription	Brain Anterior Caudate	brain
13	chr3:99579200-99591000	Genic enhancers	NH-A	brain
14	chr3:99579400-99587000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:99579400-99591000	Weak transcription	Fetal Lung	lung
16	chr3:99579600-99592400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:99580600-99587000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:99580600-99587600	Weak transcription	Brain Angular Gyrus	brain
19	chr3:99580800-99590800	Weak transcription	Lung	lung
20	chr3:99581200-99589200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:99581400-99594000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr3:99581800-99589600	Weak transcription	Gastric	stomach
23	chr3:99582000-99587200	Weak transcription	Spleen	Spleen
24	chr3:99582000-99589400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:99582000-99589400	Weak transcription	Right Ventricle	heart
26	chr3:99582200-99586400	Weak transcription	Psoas Muscle	Psoas
27	chr3:99582200-99587000	Weak transcription	Right Atrium	heart
28	chr3:99582400-99587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:99582400-99587000	Weak transcription	NHEK	skin
30	chr3:99582400-99589400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:99582600-99587000	Weak transcription	Placenta	Placenta
32	chr3:99583000-99587200	Enhancers	Rectal Smooth Muscle	rectum
33	chr3:99583200-99586400	Enhancers	NHLF	lung
34	chr3:99583400-99586400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:99583600-99586600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:99583600-99587000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:99583600-99593600	Weak transcription	Primary B cells from cord blood	blood
38	chr3:99584000-99587600	Genic enhancers	HSMM	muscle
39	chr3:99584200-99586600	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr3:99584400-99588600	Weak transcription	Fetal Intestine Large	intestine
41	chr3:99584600-99586600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr3:99584600-99587600	Enhancers	Primary T cells from cord blood	blood
43	chr3:99584800-99586800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr3:99584800-99587400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr3:99584800-99587600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:99585000-99587000	Strong transcription	Left Ventricle	heart
47	chr3:99585000-99587200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
48	chr3:99585000-99590800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:99585200-99586400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:99585200-99586400	Genic enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links