The 2.0 version of rSNPBase

Variant report

Variant rs528568101
Chromosome Location chr1:61684107-61684108
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
2 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
3 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
6 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:61674200-61686200 Weak transcription Brain Cingulate Gyrus brain
8 chr1:61674800-61685000 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:61676600-61685800 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr1:61676600-61690000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:61677600-61692400 Weak transcription Esophagus oesophagus
12 chr1:61677800-61685600 Weak transcription Fetal Stomach stomach
13 chr1:61679200-61692200 Weak transcription NHEK skin
14 chr1:61679600-61684400 Enhancers Liver Liver
15 chr1:61679600-61685800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:61679800-61687400 Weak transcription Fetal Brain Male brain
17 chr1:61680000-61720200 Weak transcription Fetal Muscle Trunk muscle
18 chr1:61680800-61687400 Weak transcription A549 lung
19 chr1:61681800-61686000 Weak transcription Brain Substantia Nigra brain
20 chr1:61682000-61686200 Weak transcription Brain Anterior Caudate brain
21 chr1:61682000-61687400 Weak transcription Fetal Lung lung
22 chr1:61682000-61690200 Weak transcription Ovary ovary
23 chr1:61682000-61692400 Weak transcription Left Ventricle heart
24 chr1:61682000-61706800 Weak transcription Gastric stomach
25 chr1:61682200-61686000 Weak transcription HepG2 liver
26 chr1:61682200-61691800 Weak transcription Stomach Smooth Muscle stomach
27 chr1:61683000-61684200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:61683200-61684400 ZNF genes & repeats K562 blood
29 chr1:61683600-61687200 Weak transcription Brain Hippocampus Middle brain
30 chr1:61683800-61684200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:61683800-61684200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:61683800-61684200 Enhancers Psoas Muscle Psoas
33 chr1:61683800-61685800 Weak transcription Colon Smooth Muscle Colon
34 chr1:61683800-61686200 Weak transcription Rectal Smooth Muscle rectum
35 chr1:61683800-61692400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:61684000-61685600 Weak transcription Brain Germinal Matrix brain
37 chr1:61684000-61685800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:61684000-61687400 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr1:61684000-61690000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015