Variant report

Variant	rs528579123
Chromosome Location	chr4:124528554-124528555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv469710	chr4:124474286-124623722	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv482747	chr4:124474286-124623722	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830047	chr4:124504051-124699142	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv879873	chr4:124528452-124590869	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124524800-124529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:124527400-124529000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:124527400-124529400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:124527600-124528600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr4:124527600-124528800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:124527600-124529000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:124527600-124529200	Enhancers	Primary T cells from cord blood	blood
8	chr4:124527600-124529400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:124527600-124529400	Enhancers	Fetal Thymus	thymus
10	chr4:124527600-124529600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:124527800-124528600	Enhancers	GM12878-XiMat	blood
12	chr4:124527800-124528800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr4:124527800-124529200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:124528000-124528600	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:124528000-124528600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr4:124528000-124528600	Enhancers	Dnd41	blood
17	chr4:124528000-124528800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr4:124528000-124528800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr4:124528000-124529400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr4:124528200-124528600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:124528200-124528600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr4:124528200-124528800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:124528400-124529200	Enhancers	Monocytes-CD14+_RO01746	blood

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