Variant report

Variant	rs528609081
Chromosome Location	chr2:66924411-66924412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:66922412..66924647-chr2:66925905..66928525,2	MCF-7	breast:
2	chr2:66919319..66922022-chr2:66923569..66925465,2	K562	blood:
3	chr2:66924129..66926148-chr2:66928849..66931547,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPRED2-7	chr2:66924257-66924427	XLOC_002140
2	lnc-SPRED2-7	chr2:66924294-66924427	XLOC_002140
3	lnc-SPRED2-7	chr2:66924290-66924427	XLOC_002140
4	lnc-SPRED2-7	chr2:66924162-66924427	NR_110264
5	lnc-SPRED2-7	chr2:66924162-66924427	NR_110265

No data

Variant related genes	Relation type
ENSG00000237179	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012523	chr2:66919704-66961372	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv979386	chr2:66923587-66929224	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66919000-66927000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:66919200-66925200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:66919200-66927200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:66919200-66929000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:66920400-66925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:66920400-66927000	Weak transcription	Fetal Intestine Large	intestine
7	chr2:66920600-66925000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:66921200-66926800	Enhancers	Fetal Kidney	kidney
9	chr2:66921400-66924800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:66921400-66924800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:66921400-66925200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:66921400-66925400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:66921400-66927800	Enhancers	Fetal Stomach	stomach
14	chr2:66921600-66926200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:66921800-66926600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:66922200-66924600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:66922400-66924800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:66922800-66924600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:66922800-66925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:66923000-66925000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:66923800-66924600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:66924000-66925000	Weak transcription	Brain Germinal Matrix	brain
23	chr2:66924000-66926000	Enhancers	Fetal Lung	lung
24	chr2:66924000-66927200	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:66924200-66924600	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:66924400-66926800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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