Variant report

Variant	rs528618983
Chromosome Location	chr5:164685731-164685732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv526419	chr5:164675241-164755174	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
8	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164684600-164688000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:164685200-164685800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:164685200-164685800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:164685200-164686000	Enhancers	Fetal Brain Female	brain
5	chr5:164685200-164686400	Enhancers	Fetal Lung	lung
6	chr5:164685200-164687000	Enhancers	Brain Germinal Matrix	brain
7	chr5:164685400-164685800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:164685400-164685800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:164685400-164685800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:164685400-164685800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:164685400-164685800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:164685400-164686000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:164685400-164686000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:164685400-164686000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:164685400-164686000	Enhancers	Ovary	ovary
16	chr5:164685400-164686200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:164685400-164686400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:164685400-164686400	Enhancers	Fetal Stomach	stomach
19	chr5:164685600-164686200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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