Variant report

Variant	rs528623020
Chromosome Location	chr6:11616625-11616626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11615083..11617199-chr6:12286030..12287822,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3442943	chr6:11616541-11619014	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:11612800-11617000	Enhancers	HSMMtube	muscle
4	chr6:11613000-11616800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:11613200-11616800	Enhancers	Hela-S3	cervix
6	chr6:11613200-11617000	Enhancers	NHDF-Ad	bronchial
7	chr6:11613200-11617000	Enhancers	Osteobl	bone
8	chr6:11613200-11617200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:11613600-11616800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:11613600-11617000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:11613800-11617000	Enhancers	HSMM	muscle
12	chr6:11614400-11616800	Enhancers	Placenta	Placenta
13	chr6:11614400-11617000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11614800-11617000	Enhancers	HUVEC	blood vessel
15	chr6:11615400-11617000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:11615600-11617000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:11615600-11621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:11616000-11616800	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:11616200-11617000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:11616400-11616800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:11616400-11616800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:11616400-11616800	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:11616400-11616800	Enhancers	Fetal Stomach	stomach
24	chr6:11616400-11616800	Enhancers	Left Ventricle	heart
25	chr6:11616400-11616800	Enhancers	Lung	lung
26	chr6:11616400-11616800	Enhancers	Ovary	ovary
27	chr6:11616400-11616800	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:11616400-11616800	Enhancers	A549	lung
29	chr6:11616400-11616800	Flanking Active TSS	NH-A	brain
30	chr6:11616400-11619600	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:11616600-11616800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:11616600-11617000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:11616600-11618200	Weak transcription	NHLF	lung
34	chr6:11616600-11622200	Weak transcription	Psoas Muscle	Psoas

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