Variant report

Variant	rs528629941
Chromosome Location	chr12:60080534-60080535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2829972	chr12:60079404-60111653	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60026600-60089200	Weak transcription	Gastric	stomach
2	chr12:60045800-60085400	Weak transcription	NHDF-Ad	bronchial
3	chr12:60045800-60099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:60050800-60098600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:60062200-60085800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:60069600-60131400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:60071600-60098600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:60072200-60098600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:60072400-60085800	Weak transcription	Primary T cells from cord blood	blood
10	chr12:60072600-60085000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:60072800-60098000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr12:60073000-60081000	Weak transcription	Ovary	ovary
13	chr12:60073000-60085000	Weak transcription	Primary B cells from cord blood	blood
14	chr12:60073000-60089000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:60073200-60081400	Weak transcription	Right Atrium	heart
16	chr12:60073200-60084400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:60078600-60085200	Weak transcription	Left Ventricle	heart
18	chr12:60078600-60085800	Weak transcription	Aorta	Aorta
19	chr12:60080400-60080800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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