Variant report

Variant	rs528632396
Chromosome Location	chr3:159494015-159494016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159481784..159484583-chr3:159491233..159495537,4	MCF-7	breast:
2	chr3:159481683..159485733-chr3:159491404..159494052,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4084	chr3:159492488-159513251	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
2	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:159488400-159494600	Weak transcription	Spleen	Spleen
6	chr3:159490200-159501400	Weak transcription	Aorta	Aorta
7	chr3:159491000-159495200	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:159491000-159495200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:159491000-159495200	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:159491000-159495200	Enhancers	HUVEC	blood vessel
11	chr3:159492200-159495000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:159492400-159495200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:159492600-159494400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:159492600-159495000	Enhancers	Osteobl	bone
15	chr3:159492800-159494600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:159492800-159494800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:159492800-159494800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:159492800-159494800	Enhancers	NHDF-Ad	bronchial
19	chr3:159492800-159495200	Enhancers	HSMM	muscle
20	chr3:159493000-159494200	Enhancers	Hela-S3	cervix
21	chr3:159493000-159494800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:159493000-159494800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:159493000-159494800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr3:159493000-159494800	Enhancers	NH-A	brain
25	chr3:159493000-159495000	Enhancers	Left Ventricle	heart
26	chr3:159493000-159495200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:159493000-159495200	Enhancers	Adipose Nuclei	Adipose
28	chr3:159493200-159494200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:159493200-159494800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:159493400-159494200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:159493400-159494600	Weak transcription	Pancreas	Pancrea
32	chr3:159493400-159494600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:159493400-159495200	Enhancers	Brain Substantia Nigra	brain
34	chr3:159493400-159495200	Enhancers	HSMMtube	muscle
35	chr3:159493400-159500600	Weak transcription	Gastric	stomach
36	chr3:159493600-159494200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr3:159493600-159494600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:159493600-159494600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr3:159493600-159494600	Enhancers	Brain Angular Gyrus	brain
40	chr3:159493600-159494600	Weak transcription	Esophagus	oesophagus
41	chr3:159493600-159494600	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:159493600-159494600	Weak transcription	Placenta	Placenta
43	chr3:159493600-159494600	Weak transcription	Right Ventricle	heart
44	chr3:159493600-159495200	Enhancers	Brain Hippocampus Middle	brain
45	chr3:159493600-159495200	Enhancers	NHLF	lung
46	chr3:159493600-159497000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:159493600-159497800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:159493600-159497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:159493600-159504400	Weak transcription	Right Atrium	heart
50	chr3:159493600-159505200	Weak transcription	Lung	lung

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