Variant report

Variant	rs528633334
Chromosome Location	chr5:57334036-57334037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57322198..57324541-chr5:57332410..57334350,3	MCF-7	breast:
2	chr5:57323308..57324878-chr5:57332622..57334138,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1015769	chr5:57309031-57338357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3434910	chr5:57317244-57340175	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3324417	chr5:57318244-57336897	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv1821795	chr5:57320343-57336494	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv272	chr5:57320938-57339546	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3468460	chr5:57321495-57335693	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv1017266	chr5:57321586-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv1031966	chr5:57321586-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv1033414	chr5:57321646-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv1023958	chr5:57321646-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3505343	chr5:57322295-57334943	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3468462	chr5:57322420-57335068	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv3505339	chr5:57322720-57334868	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv2449363	chr5:57322744-57334340	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3505341	chr5:57323057-57336140	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	esv3468455	chr5:57323072-57334221	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3468459	chr5:57323245-57334293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv513239	chr5:57323372-57334072	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv10701	chr5:57323456-57336171	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	nsv965587	chr5:57323502-57336049	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	esv1794226	chr5:57323612-57334825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1817950	chr5:57323612-57334825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv1819443	chr5:57323612-57334825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv511309	chr5:57323612-57334825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv1796448	chr5:57323612-57338885	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
36	esv1803353	chr5:57323612-57338885	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
37	nsv1031755	chr5:57326015-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
38	nsv1018137	chr5:57326015-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
39	nsv1022023	chr5:57326015-57341014	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
40	nsv1031567	chr5:57326015-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
41	nsv1033110	chr5:57326015-57342120	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
42	esv1792664	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
43	nsv1020020	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
44	esv1827516	chr5:57326027-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
45	nsv1028094	chr5:57326151-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
46	nsv1034592	chr5:57326151-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
47	nsv1021126	chr5:57326151-57341144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
48	nsv1026096	chr5:57326268-57338357	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
49	nsv598234	chr5:57326833-57334047	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv598235	chr5:57326833-57340902	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57332600-57338200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links