Variant report

Variant	rs528648933
Chromosome Location	chr13:67500453-67500454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67499121..67501052-chr13:67506413..67508246,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv523360	chr13:67322714-67520344	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1051576	chr13:67322747-67520255	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900406	chr13:67434161-67532205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900407	chr13:67434161-67603745	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv562138	chr13:67455787-67511430	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv437166	chr13:67499279-67528573	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67500000-67501200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr13:67500000-67501400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:67500000-67501400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:67500200-67501000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:67500200-67501000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:67500200-67501200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:67500200-67501200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:67500200-67501400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:67500200-67501600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:67500200-67502000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:67500200-67502200	Enhancers	HMEC	breast
12	chr13:67500400-67500600	Enhancers	A549	lung
13	chr13:67500400-67500800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:67500400-67500800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:67500400-67500800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:67500400-67501000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:67500400-67501000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr13:67500400-67501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr13:67500400-67501200	Enhancers	Brain Angular Gyrus	brain
20	chr13:67500400-67501400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr13:67500400-67501600	Enhancers	Brain Anterior Caudate	brain
22	chr13:67500400-67501600	Enhancers	Brain Cingulate Gyrus	brain
23	chr13:67500400-67501800	Enhancers	HUVEC	blood vessel
24	chr13:67500400-67502000	Enhancers	NHEK	skin
25	chr13:67500400-67502200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:67500400-67503800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links