Variant report

Variant	rs528666575
Chromosome Location	chr9:102880349-102880350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv968739	chr9:102879081-102882884	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102881000	Weak transcription	Gastric	stomach
2	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:102862400-102881400	Weak transcription	Colonic Mucosa	Colon
4	chr9:102862800-102881800	Weak transcription	Right Ventricle	heart
5	chr9:102862800-102887400	Weak transcription	Pancreas	Pancrea
6	chr9:102867000-102881000	Weak transcription	Spleen	Spleen
7	chr9:102867000-102899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:102868600-102895600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:102869000-102881800	Weak transcription	Psoas Muscle	Psoas
10	chr9:102869000-102886600	Weak transcription	K562	blood
11	chr9:102869000-102888600	Weak transcription	Hela-S3	cervix
12	chr9:102869200-102889800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:102869200-102901800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:102869400-102899000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:102869800-102895600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:102869800-102896400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:102870000-102882800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:102870000-102887200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:102870000-102892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:102870000-102895800	Weak transcription	Thymus	Thymus
21	chr9:102870000-102902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:102870200-102881200	Weak transcription	Fetal Kidney	kidney
23	chr9:102870200-102891000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:102870600-102888600	Weak transcription	Fetal Thymus	thymus
25	chr9:102871000-102890200	Weak transcription	HUVEC	blood vessel
26	chr9:102871200-102890600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:102871200-102897400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:102871400-102890200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr9:102872000-102896600	Weak transcription	Placenta	Placenta
30	chr9:102872600-102883400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:102872800-102895000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:102873800-102882400	Weak transcription	Primary B cells from cord blood	blood
33	chr9:102873800-102888400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:102873800-102895800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr9:102873800-102900200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr9:102874000-102884400	Weak transcription	GM12878-XiMat	blood
37	chr9:102874000-102888600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:102874000-102896000	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:102874000-102896000	Weak transcription	Lung	lung
40	chr9:102874200-102880400	Weak transcription	NHLF	lung
41	chr9:102874200-102881800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:102874200-102882200	Weak transcription	Dnd41	blood
43	chr9:102874200-102882600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:102874200-102883200	Weak transcription	Liver	Liver
45	chr9:102874200-102884200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr9:102874200-102884600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:102874200-102884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:102874200-102884800	Weak transcription	Fetal Brain Female	brain
49	chr9:102874200-102885400	Weak transcription	NHDF-Ad	bronchial
50	chr9:102874200-102887200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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