Variant report

Variant	rs528682690
Chromosome Location	chr6:144384326-144384327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
2	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:
5	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358461	chr6:144384284-144386832	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384600	Weak transcription	Gastric	stomach
2	chr6:144383600-144384400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:144383600-144384400	Enhancers	Brain Substantia Nigra	brain
4	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:144383800-144384400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:144383800-144384400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:144383800-144384400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:144383800-144384400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:144383800-144384400	Enhancers	Brain Anterior Caudate	brain
10	chr6:144383800-144384400	Bivalent Enhancer	HepG2	liver
11	chr6:144383800-144384600	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:144383800-144385000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:144383800-144385200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:144384000-144384400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr6:144384000-144384400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:144384000-144384400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:144384000-144384400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:144384000-144384400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:144384000-144384400	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:144384000-144384400	Bivalent Enhancer	Brain Germinal Matrix	brain
23	chr6:144384000-144384400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:144384000-144384400	Bivalent Enhancer	Fetal Intestine Small	intestine
25	chr6:144384000-144384600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:144384000-144384600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:144384000-144384800	Flanking Active TSS	Thymus	Thymus
30	chr6:144384000-144384800	Flanking Active TSS	K562	blood
31	chr6:144384000-144385000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr6:144384200-144384400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr6:144384200-144384400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:144384200-144384400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:144384200-144384400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:144384200-144384400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr6:144384200-144384400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr6:144384200-144384400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr6:144384200-144384400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr6:144384200-144384400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:144384200-144384400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:144384200-144384400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:144384200-144384400	Enhancers	Liver	Liver
44	chr6:144384200-144384400	Bivalent Enhancer	Brain Angular Gyrus	brain
45	chr6:144384200-144384400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:144384200-144384400	Enhancers	Colon Smooth Muscle	Colon
47	chr6:144384200-144384400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr6:144384200-144384400	Bivalent Enhancer	Fetal Intestine Large	intestine
49	chr6:144384200-144384400	Flanking Active TSS	Fetal Thymus	thymus
50	chr6:144384200-144384400	Enhancers	Pancreas	Pancrea

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