Variant report

Variant	rs528697974
Chromosome Location	chr15:82647353-82647354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:82646972-82647524	SK-N-MC	brain:	n/a	n/a
2	SIN3AK20	chr15:82646721-82648202	HepG2	liver:	n/a	n/a
3	POU2F2	chr15:82646028-82649728	GM12878	blood:	n/a	chr15:82646223-82646230 chr15:82646220-82646234 chr15:82647642-82647654 chr15:82647847-82647859
4	POLR2A	chr15:82646677-82647716	GM12891	blood:	n/a	n/a
5	SP1	chr15:82646722-82647626	A549	lung:	n/a	chr15:82647199-82647211 chr15:82647199-82647211 chr15:82647200-82647209 chr15:82647201-82647210
6	IRF4	chr15:82646306-82647632	GM12878	blood:	n/a	n/a
7	POLR2A	chr15:82646917-82647524	U87	brain:	n/a	n/a
8	FOXA2	chr15:82647057-82647583	A549	lung:	n/a	n/a
9	POLR2A	chr15:82646950-82647552	PFSK-1	brain:	n/a	n/a
10	SP1	chr15:82646408-82648228	GM12878	blood:	n/a	chr15:82647199-82647211 chr15:82647787-82647801 chr15:82647199-82647211 chr15:82647690-82647699 chr15:82647200-82647209 chr15:82647201-82647210
11	PAX5	chr15:82646656-82648238	GM12878	blood:	n/a	n/a
12	USF1	chr15:82646766-82647509	A549	lung:	n/a	n/a
13	POLR2A	chr15:82646936-82648216	A549	lung:	n/a	n/a
14	SP1	chr15:82646546-82647599	HepG2	liver:	n/a	chr15:82647199-82647211 chr15:82647199-82647211 chr15:82647200-82647209 chr15:82647201-82647210
15	TAF1	chr15:82646691-82647642	Hela-S3	cervix:	n/a	n/a
16	EBF1	chr15:82646630-82648254	GM12878	blood:	n/a	chr15:82647971-82647980
17	POLR2A	chr15:82646982-82647620	A549	lung:	n/a	n/a
18	POLR2A	chr15:82646863-82647702	PFSK-1	brain:	n/a	n/a
19	HEY1	chr15:82646966-82647634	HepG2	liver:	n/a	n/a
20	USF1	chr15:82646684-82647662	HepG2	liver:	n/a	chr15:82647572-82647588
21	RXRA	chr15:82646870-82648294	HepG2	liver:	n/a	chr15:82647678-82647698 chr15:82648023-82648043
22	TCF12	chr15:82646677-82648293	GM12878	blood:	n/a	n/a
23	POLR2A	chr15:82646814-82647675	GM12891	blood:	n/a	n/a
24	POLR2A	chr15:82646969-82648177	GM12878	blood:	n/a	n/a
25	FOXA1	chr15:82646691-82647564	HepG2	liver:	n/a	n/a
26	FOSL2	chr15:82646577-82647475	HepG2	liver:	n/a	n/a
27	POLR2A	chr15:82646591-82648200	GM12878	blood:	n/a	n/a
28	GABPA	chr15:82646915-82647834	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr15:82646831-82647651	PANC-1	pancreas:	n/a	n/a
30	TAF1	chr15:82646704-82648213	HepG2	liver:	n/a	n/a
31	CTCF	chr15:82647031-82647572	K562	blood:	n/a	chr15:82647341-82647350
32	HEY1	chr15:82646581-82648307	HepG2	liver:	n/a	chr15:82648112-82648127 chr15:82647713-82647728
33	TAF1	chr15:82646714-82648262	H1-hESC	embryonic stem cell:	n/a	n/a
34	SIX5	chr15:82647142-82647359	K562	blood:	n/a	n/a
35	PAX5	chr15:82646564-82648276	GM12878	blood:	n/a	n/a
36	POLR2A	chr15:82646774-82648182	GM12878	blood:	n/a	n/a
37	POLR2A	chr15:82646911-82647699	SK-N-MC	brain:	n/a	n/a
38	TAF1	chr15:82646680-82647725	Hela-S3	cervix:	n/a	n/a
39	POU2F2	chr15:82646917-82647539	GM12878	blood:	n/a	n/a
40	HEY1	chr15:82646906-82647730	K562	blood:	n/a	chr15:82647713-82647728
41	IRF4	chr15:82646525-82647641	GM12878	blood:	n/a	n/a
42	PBX3	chr15:82646738-82647637	GM12878	blood:	n/a	chr15:82647240-82647260
43	TCF12	chr15:82646965-82647523	HepG2	liver:	n/a	n/a
44	FOSL2	chr15:82646623-82648239	HepG2	liver:	n/a	chr15:82647979-82647988 chr15:82647735-82647744
45	POLR2A	chr15:82646758-82647682	GM12878	blood:	n/a	n/a
46	ZBTB33	chr15:82646753-82647510	HepG2	liver:	n/a	n/a
47	POLR2A	chr15:82646651-82648226	H1-hESC	embryonic stem cell:	n/a	n/a
48	HEY1	chr15:82646922-82647676	K562	blood:	n/a	n/a
49	RXRA	chr15:82646663-82647451	GM12878	blood:	n/a	n/a
50	JUND	chr15:82646585-82647691	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
UBE2Q2P2	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3414396	chr15:82581647-82777145	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3512406	chr15:82581647-82787145	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3512407	chr15:82581647-82787145	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1795729	chr15:82589095-82652378	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1850132	chr15:82591292-82663969	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv904446	chr15:82599306-82828113	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv510669	chr15:82600766-83011258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	21 gene(s)	inside rSNPs	diseases
9	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
11	nsv976957	chr15:82615006-82692689	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv12588	chr15:82629009-82652621	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv19566	chr15:82633405-82681774	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1814521	chr15:82643883-82673432	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
15	esv13042	chr15:82643956-82652979	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
16	esv1812622	chr15:82644128-82679305	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
17	nsv9284	chr15:82644219-82688988	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv1806812	chr15:82644794-82679505	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
19	esv1807667	chr15:82644904-82679305	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
20	esv1845785	chr15:82646249-82679305	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
21	esv3375049	chr15:82646422-82649770	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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