Variant report

Variant	rs528726534
Chromosome Location	chr2:179057955-179057956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr2:179057847-179058647	HepG2	liver:	n/a	n/a
2	CTCF	chr2:179057940-179058090	AoAF	blood vessel:	n/a	n/a
3	FOXA2	chr2:179057789-179059308	HepG2	liver:	n/a	n/a
4	NR2F2	chr2:179057922-179058787	HepG2	liver:	n/a	n/a
5	MXI1	chr2:179057933-179060728	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179057756..179060082-chr2:179314891..179318046,3	MCF-7	breast:
2	chr2:178975761..178978600-chr2:179056476..179059620,3	K562	blood:
3	chr2:178978462..178980467-chr2:179057158..179058664,2	MCF-7	breast:
4	chr2:178976327..178979048-chr2:179055214..179057976,2	K562	blood:
5	chr2:179056933..179060923-chr2:179315358..179318702,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
OSBPL6	TF binding region
ENSG00000204311	Chromatin interaction
ENSG00000155636	Chromatin interaction
ENSG00000180228	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875453	chr2:179022751-179060313	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875454	chr2:179022751-179066443	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3340257	chr2:179057106-179061404	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179055800-179058000	Enhancers	Liver	Liver
2	chr2:179056400-179058400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:179056600-179058000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:179056600-179058000	Weak transcription	NHEK	skin
5	chr2:179056800-179058000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:179056800-179058000	Weak transcription	HMEC	breast
7	chr2:179057800-179058000	Enhancers	Adipose Nuclei	Adipose
8	chr2:179057800-179058000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr2:179057800-179058000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:179057800-179058000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:179057800-179058000	Enhancers	Stomach Smooth Muscle	stomach
12	chr2:179057800-179058400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links