Variant report

Variant	rs528813801
Chromosome Location	chr3:136069994-136069995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136069906..136072188-chr3:136072294..136075006,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:136042600-136072600	Strong transcription	Dnd41	blood
4	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
5	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:136043800-136070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:136045600-136079200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:136047800-136074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:136051600-136070800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr3:136052800-136070800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr3:136053000-136072400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:136054200-136085400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:136054600-136074200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:136054800-136076600	Weak transcription	Brain Substantia Nigra	brain
17	chr3:136055600-136073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
19	chr3:136059000-136072000	Weak transcription	GM12878-XiMat	blood
20	chr3:136059600-136070400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:136059600-136079000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:136061800-136074200	Weak transcription	Brain Germinal Matrix	brain
23	chr3:136063200-136071000	Weak transcription	Fetal Brain Female	brain
24	chr3:136063200-136072200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:136063400-136071800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:136063400-136072200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:136063400-136072200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:136063400-136073800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:136063400-136139000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:136063400-136139000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:136063600-136097000	Weak transcription	Colonic Mucosa	Colon
32	chr3:136063600-136105600	Weak transcription	Gastric	stomach
33	chr3:136063600-136110600	Weak transcription	Small Intestine	intestine
34	chr3:136063600-136139200	Weak transcription	Pancreas	Pancrea
35	chr3:136063800-136072200	Weak transcription	Stomach Mucosa	stomach
36	chr3:136063800-136095200	Weak transcription	Lung	lung
37	chr3:136064800-136072400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:136065400-136097200	Weak transcription	HepG2	liver
39	chr3:136067200-136071200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr3:136067400-136070000	Strong transcription	Primary T cells from cord blood	blood
41	chr3:136067400-136070800	Strong transcription	Fetal Thymus	thymus
42	chr3:136067600-136074600	Weak transcription	Fetal Intestine Large	intestine
43	chr3:136067600-136109000	Weak transcription	HUVEC	blood vessel
44	chr3:136068000-136071000	Strong transcription	Primary B cells from cord blood	blood
45	chr3:136068200-136074800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:136068200-136075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:136068400-136070000	Weak transcription	Brain Anterior Caudate	brain
48	chr3:136068400-136072000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:136068400-136074400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:136068400-136074800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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