Variant report

Variant	rs528872667
Chromosome Location	chr17:19436964-19436965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr17:19436917-19437346	HepG2	liver:	n/a	n/a
2	MAX	chr17:19436948-19437704	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr17:19436802-19437398	HepG2	liver:	n/a	n/a
4	MAX	chr17:19436769-19437882	A549	lung:	n/a	n/a
5	CEBPD	chr17:19436904-19437400	HepG2	liver:	n/a	n/a
6	TAF1	chr17:19436868-19437779	HepG2	liver:	n/a	n/a
7	POLR2A	chr17:19436957-19437354	A549	lung:	n/a	n/a
8	MAZ	chr17:19436718-19437397	HepG2	liver:	n/a	n/a
9	MXI1	chr17:19436721-19438071	HepG2	liver:	n/a	n/a
10	POLR2A	chr17:19436768-19437304	MCF-7	breast:	n/a	n/a
11	HEY1	chr17:19436862-19437429	HepG2	liver:	n/a	n/a
12	MAX	chr17:19436638-19438058	A549	lung:	n/a	n/a
13	MAX	chr17:19436954-19437452	SK-N-SH	brain:	n/a	n/a
14	E2F6	chr17:19436875-19437865	A549	lung:	n/a	chr17:19437463-19437471 chr17:19437463-19437470 chr17:19437462-19437473 chr17:19437463-19437471 chr17:19437462-19437472 chr17:19436915-19436925
15	POLR2A	chr17:19436836-19437296	HepG2	liver:	n/a	n/a
16	ZBTB7A	chr17:19436701-19437171	ECC-1	luminal epithelium:	n/a	chr17:19437036-19437043
17	POLR2A	chr17:19436874-19437353	HepG2	liver:	n/a	n/a
18	POLR2A	chr17:19436595-19437998	HepG2	liver:	n/a	n/a
19	POLR2A	chr17:19436919-19437472	A549	lung:	n/a	n/a
20	POLR2A	chr17:19436842-19437852	HepG2	liver:	n/a	n/a
21	HDAC2	chr17:19436626-19437287	HepG2	liver:	n/a	n/a
22	POLR2A	chr17:19436899-19437410	A549	lung:	n/a	n/a
23	RAD21	chr17:19436919-19437422	HepG2	liver:	n/a	n/a
24	TCF12	chr17:19436936-19437567	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr17:19436816-19437725	A549	lung:	n/a	n/a
26	HNF4G	chr17:19436778-19437240	HepG2	liver:	n/a	n/a
27	CREB1	chr17:19436943-19437324	A549	lung:	n/a	n/a
28	HEY1	chr17:19436646-19437445	HepG2	liver:	n/a	n/a
29	YY1	chr17:19436889-19437824	HepG2	liver:	n/a	chr17:19437657-19437671
30	HNF4A	chr17:19436892-19437180	HepG2	liver:	n/a	n/a
31	POLR2A	chr17:19436868-19437299	HepG2	liver:	n/a	n/a
32	POLR2A	chr17:19436858-19438080	HepG2	liver:	n/a	n/a
33	POLR2A	chr17:19436779-19437969	GM19193	blood:	n/a	n/a
34	HNF4A	chr17:19436839-19437871	HepG2	liver:	n/a	chr17:19437700-19437714 chr17:19437701-19437713 chr17:19437701-19437714 chr17:19437700-19437713 chr17:19437698-19437716 chr17:19437701-19437714 chr17:19437701-19437713 chr17:19437844-19437858 chr17:19437701-19437714 chr17:19437699-19437714 chr17:19437701-19437713
35	TAF1	chr17:19436905-19437358	HepG2	liver:	n/a	n/a
36	HA-E2F1	chr17:19436812-19437790	MCF-7	breast:	n/a	chr17:19437463-19437471 chr17:19437463-19437470 chr17:19437462-19437473 chr17:19437463-19437471 chr17:19437462-19437472 chr17:19436915-19436925
37	HNF4A	chr17:19436853-19437288	HepG2	liver:	n/a	n/a
38	POLR2A	chr17:19436869-19437434	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19435840..19438479-chr17:19458086..19460035,3	MCF-7	breast:

Variant related genes	Relation type
SLC47A1	TF binding region
ENSG00000142494	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	esv3335342	chr17:19436410-19438558	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19436200-19437200	Flanking Active TSS	Liver	Liver
2	chr17:19436400-19437000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr17:19436400-19437000	Flanking Bivalent TSS/Enh	HepG2	liver
4	chr17:19436400-19437200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr17:19436400-19437200	Enhancers	Spleen	Spleen
6	chr17:19436400-19437800	Bivalent/Poised TSS	NHEK	skin
7	chr17:19436400-19438000	Bivalent Enhancer	Fetal Brain Male	brain
8	chr17:19436400-19438200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr17:19436400-19438400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr17:19436400-19438400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
11	chr17:19436600-19437000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:19436600-19437000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:19436600-19437000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
14	chr17:19436600-19437000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr17:19436600-19437000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
16	chr17:19436600-19437000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr17:19436600-19437000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:19436600-19437000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr17:19436600-19437000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
20	chr17:19436600-19437000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
21	chr17:19436600-19437000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr17:19436600-19437000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
23	chr17:19436600-19437000	Flanking Active TSS	HUVEC	blood vessel
24	chr17:19436600-19437200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:19436600-19437200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr17:19436600-19437200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:19436600-19437200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:19436600-19437200	Bivalent Enhancer	Placenta	Placenta
29	chr17:19436600-19437200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr17:19436600-19437400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
31	chr17:19436600-19437400	Active TSS	NHDF-Ad	bronchial
32	chr17:19436600-19437600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr17:19436600-19437600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr17:19436600-19437600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
35	chr17:19436600-19437800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr17:19436600-19437800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
37	chr17:19436600-19437800	Active TSS	Colon Smooth Muscle	Colon
38	chr17:19436600-19437800	Active TSS	Rectal Smooth Muscle	rectum
39	chr17:19436600-19438000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr17:19436600-19438000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr17:19436600-19438000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr17:19436600-19438000	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr17:19436600-19438000	Active TSS	Brain Substantia Nigra	brain
44	chr17:19436600-19438000	Active TSS	Fetal Kidney	kidney
45	chr17:19436600-19438200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr17:19436600-19438200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
47	chr17:19436600-19438200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr17:19436600-19438200	Active TSS	Psoas Muscle	Psoas
49	chr17:19436800-19437000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr17:19436800-19437000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links