Variant report

Variant	rs528877219
Chromosome Location	chr7:116769862-116769863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:116766902..116769350-chr7:116769710..116771683,2	K562	blood:
2	chr7:116596278..116599178-chr7:116769841..116772254,2	K562	blood:
3	chr7:116768426..116770966-chr7:116780853..116782813,2	K562	blood:
4	chr7:116769743..116772310-chr7:116777915..116779667,2	MCF-7	breast:
5	chr7:116768585..116771168-chr7:116773289..116776749,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAPZA2-2	chr7:116769847-116769901	NONHSAT122920

No data

Variant related genes	Relation type
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv967508	chr7:116769813-116772201	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116738400-116774200	Weak transcription	Ovary	ovary
2	chr7:116738400-116779600	Weak transcription	Esophagus	oesophagus
3	chr7:116751400-116778600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:116754200-116797400	Weak transcription	Fetal Stomach	stomach
5	chr7:116755200-116772000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:116759200-116778200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:116759600-116774200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:116761200-116771200	Weak transcription	Fetal Brain Female	brain
9	chr7:116763800-116771600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:116763800-116772400	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:116764000-116774400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:116765000-116771600	Weak transcription	Placenta	Placenta
13	chr7:116765000-116771800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:116765000-116772200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:116765000-116773800	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:116765000-116774400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:116765000-116778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:116765000-116782000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:116765000-116783000	Weak transcription	Fetal Intestine Small	intestine
20	chr7:116765000-116790200	Weak transcription	Psoas Muscle	Psoas
21	chr7:116765000-116792400	Weak transcription	Fetal Kidney	kidney
22	chr7:116765000-116797200	Weak transcription	Pancreas	Pancrea
23	chr7:116765200-116771600	Weak transcription	NHEK	skin
24	chr7:116765200-116773000	Weak transcription	Liver	Liver
25	chr7:116765200-116773800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr7:116765200-116773800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:116765200-116774200	Weak transcription	Left Ventricle	heart
28	chr7:116765200-116778400	Weak transcription	Aorta	Aorta
29	chr7:116765400-116770000	Enhancers	NHLF	lung
30	chr7:116765400-116770400	Weak transcription	K562	blood
31	chr7:116765400-116771400	Weak transcription	HMEC	breast
32	chr7:116765400-116771400	Weak transcription	HSMMtube	muscle
33	chr7:116765400-116771600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:116765400-116772400	Weak transcription	Fetal Intestine Large	intestine
35	chr7:116765400-116776000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr7:116765400-116779400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr7:116765400-116784200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:116765400-116791800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:116765400-116798000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:116765600-116771000	Weak transcription	HSMM	muscle
41	chr7:116765600-116771400	Weak transcription	HUVEC	blood vessel
42	chr7:116765600-116771600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:116765600-116775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr7:116765600-116783000	Weak transcription	HepG2	liver
45	chr7:116766200-116771400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:116766800-116771400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:116766800-116772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:116767000-116771600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:116767000-116771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:116767000-116774200	Weak transcription	Brain Inferior Temporal Lobe	brain

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