Variant report

Variant	rs528935188
Chromosome Location	chr17:66788387-66788388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv526857	chr17:66787428-66789959	Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
4	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66784800-66789800	Enhancers	HepG2	liver
3	chr17:66785000-66790600	Enhancers	Liver	Liver
4	chr17:66786400-66791000	Enhancers	Adipose Nuclei	Adipose
5	chr17:66786400-66791000	Enhancers	NHDF-Ad	bronchial
6	chr17:66786400-66791200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr17:66786400-66791800	Enhancers	Fetal Lung	lung
8	chr17:66786400-66791800	Enhancers	NHLF	lung
9	chr17:66786600-66788400	Enhancers	Ovary	ovary
10	chr17:66786600-66791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:66786800-66791000	Enhancers	Osteobl	bone
12	chr17:66787000-66791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr17:66787000-66791800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr17:66787200-66788800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr17:66787200-66789200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr17:66787200-66789200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr17:66787200-66789800	Weak transcription	Stomach Mucosa	stomach
18	chr17:66787200-66791800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr17:66787800-66789400	Enhancers	HSMMtube	muscle
20	chr17:66787800-66791600	Enhancers	Fetal Stomach	stomach
21	chr17:66788000-66789000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr17:66788000-66789000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:66788000-66789000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr17:66788000-66789200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:66788000-66790600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr17:66788000-66790800	Enhancers	Brain Anterior Caudate	brain
27	chr17:66788000-66791000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:66788000-66791200	Enhancers	Brain Hippocampus Middle	brain
29	chr17:66788000-66791200	Enhancers	Brain Substantia Nigra	brain
30	chr17:66788000-66791200	Enhancers	Hela-S3	cervix
31	chr17:66788000-66791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:66788000-66805800	Weak transcription	Right Atrium	heart
33	chr17:66788200-66788400	Enhancers	Primary B cells from cord blood	blood
34	chr17:66788200-66789000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:66788200-66789200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr17:66788200-66789200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr17:66788200-66789200	Weak transcription	Fetal Intestine Large	intestine
38	chr17:66788200-66789200	Weak transcription	Fetal Muscle Leg	muscle
39	chr17:66788200-66790200	Weak transcription	Placenta	Placenta
40	chr17:66788200-66790600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr17:66788200-66790600	Weak transcription	Spleen	Spleen
42	chr17:66788200-66791000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr17:66788200-66791200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links