Variant report

Variant	rs528951077
Chromosome Location	chr6:64723196-64723197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64720400-64725600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:64721600-64723200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:64722000-64723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:64722200-64723600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:64722200-64725600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:64722400-64723200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:64722400-64723200	Active TSS	Brain Anterior Caudate	brain
8	chr6:64722400-64723200	Active TSS	Brain Cingulate Gyrus	brain
9	chr6:64722400-64723200	Active TSS	Brain Hippocampus Middle	brain
10	chr6:64722400-64723200	Active TSS	Brain Substantia Nigra	brain
11	chr6:64722400-64723400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:64722400-64723400	Flanking Active TSS	Fetal Brain Female	brain
13	chr6:64722400-64723600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:64722600-64723200	Active TSS	Brain Angular Gyrus	brain
15	chr6:64722600-64723200	Flanking Active TSS	Fetal Lung	lung
16	chr6:64722800-64723200	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:64722800-64723200	Active TSS	Right Atrium	heart
18	chr6:64722800-64723400	Active TSS	Brain Germinal Matrix	brain
19	chr6:64722800-64723600	Enhancers	Fetal Kidney	kidney
20	chr6:64722800-64724200	Enhancers	Fetal Brain Male	brain
21	chr6:64722800-64725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:64723000-64723200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:64723000-64723200	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:64723000-64723400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:64723000-64724000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:64723000-64724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:64723000-64725200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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