Variant report

Variant	rs529003162
Chromosome Location	chr3:51628919-51628920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv997264	chr3:51584056-51689648	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536570	chr3:51584056-51689648	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999553	chr3:51584056-51696052	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3414786	chr3:51628711-51632506	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51588000-51640000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:51600800-51654600	Weak transcription	Stomach Mucosa	stomach
3	chr3:51601200-51640000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:51602800-51643800	Weak transcription	Right Atrium	heart
5	chr3:51613200-51629400	Weak transcription	Fetal Lung	lung
6	chr3:51613200-51630800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:51613200-51640000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:51613400-51643600	Weak transcription	Pancreas	Pancrea
9	chr3:51615800-51630800	Weak transcription	Psoas Muscle	Psoas
10	chr3:51616600-51640200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:51616800-51629000	Weak transcription	Fetal Intestine Small	intestine
12	chr3:51619600-51631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:51622600-51633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:51622800-51631600	Strong transcription	Liver	Liver
15	chr3:51623000-51633000	Strong transcription	Primary T cells from cord blood	blood
16	chr3:51623200-51639800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:51623400-51631600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:51623800-51630600	Weak transcription	Fetal Brain Male	brain
19	chr3:51623800-51631800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:51624200-51631600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:51624400-51631000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr3:51624400-51631800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:51625200-51630000	Weak transcription	Fetal Stomach	stomach
24	chr3:51625200-51630800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:51625200-51631800	Weak transcription	NHLF	lung
26	chr3:51625200-51639400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:51625200-51640000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:51625200-51655400	Weak transcription	Gastric	stomach
29	chr3:51625400-51629000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:51625400-51630000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:51625400-51637400	Weak transcription	HMEC	breast
32	chr3:51625400-51640200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:51625400-51641000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:51625400-51642200	Weak transcription	Brain Germinal Matrix	brain
35	chr3:51625400-51663400	Weak transcription	Right Ventricle	heart
36	chr3:51625600-51629000	Weak transcription	Spleen	Spleen
37	chr3:51625600-51630800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:51625600-51631400	Weak transcription	Fetal Heart	heart
39	chr3:51625600-51631800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:51625600-51639800	Weak transcription	Thymus	Thymus
41	chr3:51625600-51642600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:51625600-51643400	Weak transcription	Esophagus	oesophagus
43	chr3:51625600-51654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:51625600-51654000	Weak transcription	Ovary	ovary
45	chr3:51625600-51655400	Weak transcription	Aorta	Aorta
46	chr3:51625600-51658200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:51625800-51629000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:51625800-51629000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr3:51625800-51629000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr3:51625800-51629000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links