Variant report

Variant	rs529065261
Chromosome Location	chr12:56001803-56001804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv983247	chr12:56000681-56011266	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3509550	chr12:56001135-56005383	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv1815294	chr12:56001327-56004059	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv2488219	chr12:56001465-56004826	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3509554	chr12:56001526-56004682	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3487453	chr12:56001585-56005333	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv3436833	chr12:56001585-56006083	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56001200-56003000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:56001400-56002200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:56001800-56002400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:56001800-56002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:56001800-56002800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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