Variant report

Variant	rs529121237
Chromosome Location	chr2:11220556-11220557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3406934	chr2:11220126-11222674	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11219200-11220600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:11219200-11220600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:11219200-11221000	Enhancers	Spleen	Spleen
4	chr2:11219200-11221200	Enhancers	Fetal Muscle Trunk	muscle
5	chr2:11219400-11220600	Enhancers	Fetal Muscle Leg	muscle
6	chr2:11219400-11220800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:11219400-11220800	Enhancers	Brain Substantia Nigra	brain
8	chr2:11219400-11221000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr2:11219600-11220600	Enhancers	Brain Hippocampus Middle	brain
10	chr2:11219800-11220600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:11220200-11220800	Weak transcription	Brain Germinal Matrix	brain
12	chr2:11220400-11220600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:11220400-11220800	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:11220400-11220800	Enhancers	Fetal Brain Female	brain
15	chr2:11220400-11221000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:11220400-11221200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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