Variant report
| Variant | rs529123759 |
|---|---|
| Chromosome Location | chr2:185767858-185767859 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr2:185767725-185767925 | MCF10A-Er-Src | breast: | n/a | chr2:185767871-185767882 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000237824 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv520974 | chr2:185742474-186148230 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv821846 | chr2:185753228-185774831 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv818104 | chr2:185756082-185771745 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv517466 | chr2:185756082-185778262 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
