Variant report

Variant	rs529132
Chromosome Location	chr8:102534084-102534085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102347798..102348373-chr8:102533725..102534442,2	MCF-7	breast:
2	chr8:102344764..102345713-chr8:102533645..102534512,4	MCF-7	breast:
3	chr8:102326841..102405579-chr8:102488885..102536287,493	MCF-7	breast:
4	chr5:77042168..77042975-chr8:102533412..102534205,2	MCF-7	breast:
5	chr8:102533023..102535273-chr8:102536509..102539138,2	K562	blood:
6	chr8:102339308..102339883-chr8:102533642..102534405,3	K562	blood:
7	chr8:102513353..102514317-chr8:102533738..102534540,5	MCF-7	breast:
8	chr8:102338933..102339823-chr8:102533186..102534225,4	MCF-7	breast:
9	chr8:102532737..102535677-chr8:102549512..102552169,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254063	Chromatin interaction
ENSG00000253644	Chromatin interaction
ENSG00000228224	Chromatin interaction
ENSG00000271560	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10100857	1.00[TSI][hapmap]
rs595530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102527000-102537800	Weak transcription	Placenta	Placenta
2	chr8:102527000-102551200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:102527000-102551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:102527200-102555400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:102527200-102556800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:102527800-102540600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:102527800-102541600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:102528000-102542000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:102528000-102542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:102528400-102550600	Weak transcription	Esophagus	oesophagus
11	chr8:102530800-102535400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:102533400-102534200	Enhancers	A549	lung
13	chr8:102533600-102534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:102533600-102538000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:102533800-102535200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:102533800-102538000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:102533800-102538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:102533800-102538000	Weak transcription	NHEK	skin
19	chr8:102533800-102541600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:102533800-102550200	Weak transcription	HMEC	breast
21	chr8:102533800-102551400	Weak transcription	Pancreas	Pancrea

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