Variant report

Variant	rs529133099
Chromosome Location	chr1:169658898-169658899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169658516..169660936-chr1:169662078..169664299,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872539	chr1:169658586-169674590	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169647800-169659600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:169647800-169660000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:169648200-169659000	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:169652800-169660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:169653200-169671600	Weak transcription	Spleen	Spleen
6	chr1:169656200-169659400	Enhancers	Primary B cells from cord blood	blood
7	chr1:169656200-169659400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:169656600-169659600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:169656800-169659200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:169656800-169662600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:169657000-169659400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:169657000-169660200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:169657000-169661800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:169657200-169659200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr1:169657600-169659200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:169657600-169659400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:169657800-169659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:169657800-169659800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr1:169657800-169660200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:169657800-169660600	Enhancers	Fetal Thymus	thymus
21	chr1:169658000-169659200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr1:169658200-169659400	Enhancers	Dnd41	blood
23	chr1:169658200-169660600	Enhancers	GM12878-XiMat	blood
24	chr1:169658400-169659000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:169658400-169660200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:169658400-169666200	Enhancers	Thymus	Thymus
27	chr1:169658600-169659600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr1:169658600-169661000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr1:169658800-169659000	Genic enhancers	Primary T cells from cord blood	blood
30	chr1:169658800-169660000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr1:169658800-169660400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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