Variant report

Variant	rs529161553
Chromosome Location	chr10:92792992-92792993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92791172..92794052-chr10:92801075..92803431,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895887	chr10:92791516-92836763	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92784400-92797800	Weak transcription	Aorta	Aorta
2	chr10:92784600-92796600	Weak transcription	Left Ventricle	heart
3	chr10:92785800-92793000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:92790000-92793600	Enhancers	Dnd41	blood
5	chr10:92790200-92794800	Enhancers	Fetal Thymus	thymus
6	chr10:92790800-92794800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:92791200-92793200	Weak transcription	Primary T cells from cord blood	blood
8	chr10:92791400-92793200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:92792000-92795400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:92792200-92793200	Enhancers	Brain Angular Gyrus	brain
11	chr10:92792200-92793200	Enhancers	Fetal Lung	lung
12	chr10:92792200-92794400	Enhancers	Brain Anterior Caudate	brain
13	chr10:92792200-92794800	Enhancers	Fetal Brain Male	brain
14	chr10:92792200-92795200	Enhancers	Brain Cingulate Gyrus	brain
15	chr10:92792200-92795200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:92792200-92795400	Enhancers	Brain Substantia Nigra	brain
17	chr10:92792200-92795600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:92792200-92795600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:92792200-92796600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:92792200-92797200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:92792200-92798000	Enhancers	Fetal Muscle Leg	muscle
22	chr10:92792400-92793400	Enhancers	Brain Germinal Matrix	brain
23	chr10:92792400-92793400	Enhancers	Osteobl	bone
24	chr10:92792400-92794600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:92792400-92795200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:92792600-92793000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:92792600-92793200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:92792600-92793200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:92792600-92793400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:92792600-92794600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:92792600-92795400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:92792800-92793000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:92792800-92793400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:92792800-92793800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:92792800-92794200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:92792800-92794200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:92792800-92794400	Weak transcription	Adipose Nuclei	Adipose
38	chr10:92792800-92794800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:92792800-92795000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr10:92792800-92797800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links