Variant report

Variant	rs529163992
Chromosome Location	chr4:87884581-87884582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87875765..87890159-chr4:87922878..87933002,25	K562	blood:
2	chr4:87866938..87869563-chr4:87883119..87884691,2	K562	blood:
3	chr4:87854534..87858113-chr4:87881394..87886236,9	K562	blood:
4	chr4:87867715..87870000-chr4:87883212..87884800,2	K562	blood:
5	chr4:87881202..87884789-chr4:87884979..87890767,11	K562	blood:
6	chr4:87877638..87879941-chr4:87882578..87885517,2	K562	blood:
7	chr4:87877779..87879941-chr4:87884017..87885915,2	K562	blood:
8	chr4:87852704..87859599-chr4:87881193..87886124,9	K562	blood:
9	chr4:87880314..87885431-chr4:87925237..87930359,11	K562	blood:
10	chr4:87881889..87884650-chr4:87886335..87888542,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163633	Chromatin interaction
ENSG00000172493	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv291773	chr4:87884343-87891031	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87868400-87891800	Weak transcription	Esophagus	oesophagus
2	chr4:87868600-87886800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:87869600-87886200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:87869800-87888000	Weak transcription	HUVEC	blood vessel
6	chr4:87869800-87894000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:87872600-87926200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:87872800-87891400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:87876600-87886400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:87877400-87886200	Weak transcription	Hela-S3	cervix
11	chr4:87878800-87891600	Weak transcription	NHEK	skin
12	chr4:87879000-87884800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:87879600-87885400	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:87880000-87885000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:87881000-87884600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:87881000-87891800	Weak transcription	Lung	lung
17	chr4:87881000-87897600	Weak transcription	Brain Angular Gyrus	brain
18	chr4:87881200-87890000	Weak transcription	Aorta	Aorta
19	chr4:87881400-87884600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:87881600-87884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:87882000-87884800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:87882000-87884800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:87882000-87888200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:87882000-87895400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:87882200-87884600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:87882200-87885400	Weak transcription	HSMMtube	muscle
27	chr4:87882200-87889800	Weak transcription	Pancreas	Pancrea
28	chr4:87882200-87891400	Weak transcription	Ovary	ovary
29	chr4:87882200-87895600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:87882400-87884600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:87882400-87884800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr4:87882400-87884800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr4:87882400-87886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:87882400-87887200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr4:87882400-87893800	Weak transcription	Colonic Mucosa	Colon
36	chr4:87882400-87898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:87882600-87884600	Weak transcription	HepG2	liver
38	chr4:87882600-87885000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr4:87882600-87886200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:87882600-87886800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:87882600-87891400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:87882600-87920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:87882800-87886400	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:87882800-87887200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:87882800-87888200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:87882800-87888200	Weak transcription	Right Ventricle	heart
47	chr4:87882800-87889600	Weak transcription	Small Intestine	intestine
48	chr4:87882800-87891600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:87882800-87912400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:87883000-87886200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links