Variant report

Variant	rs529224062
Chromosome Location	chr22:31985691-31985692
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31983609..31985774-chr22:32339217..32341040,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914979	chr22:31964043-31990184	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv914980	chr22:31966274-32024980	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv517534	chr22:31977594-32024980	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3496816	chr22:31985291-31990564	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3496817	chr22:31985291-31990564	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31935800-32013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr22:31947800-32009600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr22:31949400-32014400	Weak transcription	Hela-S3	cervix
4	chr22:31957400-32016400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr22:31964600-31993600	Weak transcription	Psoas Muscle	Psoas
6	chr22:31968800-31986200	Strong transcription	Fetal Thymus	thymus
7	chr22:31968800-32003800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:31974400-31998200	Weak transcription	Small Intestine	intestine
9	chr22:31974800-31998200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr22:31975000-32003800	Weak transcription	Aorta	Aorta
11	chr22:31976200-32014800	Weak transcription	A549	lung
12	chr22:31976400-32014800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr22:31976400-32019200	Weak transcription	Fetal Brain Male	brain
14	chr22:31978200-31987200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr22:31978400-31985800	Strong transcription	Thymus	Thymus
16	chr22:31978600-31985800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr22:31979600-31985800	Strong transcription	Dnd41	blood
18	chr22:31979600-31986200	Strong transcription	Primary T cells from cord blood	blood
19	chr22:31979600-31986200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr22:31979600-31986400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr22:31979800-31985800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr22:31979800-31985800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr22:31979800-31985800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr22:31979800-31985800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr22:31979800-31986200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr22:31979800-31986200	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr22:31980000-31985800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr22:31981000-31985800	Strong transcription	Brain Germinal Matrix	brain
29	chr22:31981200-31986400	Weak transcription	Fetal Heart	heart
30	chr22:31981400-31986200	Strong transcription	Fetal Stomach	stomach
31	chr22:31981600-31985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr22:31981600-31985800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr22:31981800-31995600	Weak transcription	HUVEC	blood vessel
34	chr22:31982000-31985800	Strong transcription	Brain Substantia Nigra	brain
35	chr22:31982000-31985800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr22:31982000-31989800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr22:31982000-31998000	Weak transcription	Brain Angular Gyrus	brain
38	chr22:31982400-31998200	Weak transcription	Gastric	stomach
39	chr22:31982600-31986200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr22:31982600-31997400	Weak transcription	Brain Hippocampus Middle	brain
41	chr22:31982600-31998000	Weak transcription	NHEK	skin
42	chr22:31982600-31998400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr22:31982600-32006400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr22:31982800-31986400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr22:31982800-31987000	Weak transcription	HSMMtube	muscle
46	chr22:31982800-31997600	Weak transcription	Colon Smooth Muscle	Colon
47	chr22:31982800-31998200	Weak transcription	NHLF	lung
48	chr22:31983000-31985800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr22:31983000-31986200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr22:31983000-31990200	Weak transcription	HMEC	breast

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