Variant report

Variant	rs529253614
Chromosome Location	chr19:41633642-41633643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41633343..41635661-chr19:41766604..41769050,2	K562	blood:
2	chr19:41323756..41325875-chr19:41632979..41635488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41627200-41633800	Weak transcription	Esophagus	oesophagus
2	chr19:41627200-41634000	Weak transcription	Pancreas	Pancrea
3	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:41628200-41633800	Weak transcription	Gastric	stomach
5	chr19:41630200-41634000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr19:41632400-41633800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr19:41632400-41634800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:41632800-41633800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr19:41632800-41634200	Enhancers	Liver	Liver
10	chr19:41632800-41634600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr19:41632800-41634800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr19:41632800-41634800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:41632800-41634800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr19:41632800-41634800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr19:41632800-41634800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr19:41632800-41634800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr19:41632800-41634800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr19:41632800-41634800	Enhancers	Placenta	Placenta
19	chr19:41632800-41635000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr19:41633000-41633800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr19:41633400-41633800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:41633400-41633800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr19:41633400-41634000	Enhancers	Duodenum Mucosa	Duodenum
24	chr19:41633400-41634200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr19:41633400-41634400	Enhancers	Fetal Intestine Small	intestine
26	chr19:41633400-41634600	Enhancers	Primary B cells from peripheral blood	blood
27	chr19:41633400-41634600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:41633400-41634600	Enhancers	Hela-S3	cervix
29	chr19:41633600-41633800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr19:41633600-41633800	Enhancers	Primary T cells from cord blood	blood
31	chr19:41633600-41633800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:41633600-41633800	Enhancers	Colon Smooth Muscle	Colon
33	chr19:41633600-41633800	Active TSS	Stomach Smooth Muscle	stomach
34	chr19:41633600-41633800	Enhancers	HepG2	liver
35	chr19:41633600-41634000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:41633600-41634000	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr19:41633600-41634000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:41633600-41634000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:41633600-41634200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr19:41633600-41634200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:41633600-41634200	Active TSS	Brain Substantia Nigra	brain
42	chr19:41633600-41634200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr19:41633600-41634200	Enhancers	Fetal Muscle Leg	muscle
44	chr19:41633600-41634200	Enhancers	Right Atrium	heart
45	chr19:41633600-41634200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr19:41633600-41634200	Flanking Active TSS	A549	lung
47	chr19:41633600-41634400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr19:41633600-41634600	Enhancers	Fetal Heart	heart
49	chr19:41633600-41634600	Enhancers	Fetal Muscle Trunk	muscle
50	chr19:41633600-41634800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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