Variant report

Variant	rs529259582
Chromosome Location	chr5:54056878-54056879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54049200-54057000	Weak transcription	Fetal Heart	heart
2	chr5:54052200-54059800	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:54052600-54058600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:54052600-54058800	Enhancers	NHDF-Ad	bronchial
5	chr5:54053200-54057000	Weak transcription	Ovary	ovary
6	chr5:54055000-54057200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:54055000-54058400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:54055000-54058600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:54055200-54057200	Enhancers	Aorta	Aorta
10	chr5:54055200-54058600	Enhancers	NHLF	lung
11	chr5:54055400-54058600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:54055400-54061000	Weak transcription	Pancreas	Pancrea
13	chr5:54055600-54059600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:54056000-54057200	Enhancers	Brain Hippocampus Middle	brain
15	chr5:54056000-54057400	Enhancers	HMEC	breast
16	chr5:54056000-54057600	Weak transcription	Right Atrium	heart
17	chr5:54056000-54057800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:54056000-54057800	Enhancers	HSMM	muscle
19	chr5:54056000-54058400	Enhancers	HSMMtube	muscle
20	chr5:54056200-54057200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr5:54056200-54057800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:54056400-54057600	Enhancers	Adipose Nuclei	Adipose
23	chr5:54056400-54057600	Enhancers	HUVEC	blood vessel
24	chr5:54056400-54057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:54056400-54057800	Enhancers	Left Ventricle	heart
26	chr5:54056600-54057400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:54056600-54057400	Enhancers	Hela-S3	cervix
28	chr5:54056600-54057800	Enhancers	NH-A	brain
29	chr5:54056600-54060000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:54056800-54057000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:54056800-54057000	Flanking Active TSS	Osteobl	bone
32	chr5:54056800-54057600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:54056800-54057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links