Variant report

Variant	rs529318788
Chromosome Location	chr6:117804231-117804232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:117802655..117804398-chr6:117864844..117866459,3	MCF-7	breast:
2	chr6:117802549..117804711-chr6:117824121..117828201,5	K562	blood:
3	chr6:117803575..117805462-chr6:117921337..117926516,4	K562	blood:
4	chr6:117803211..117805462-chr6:117921337..117926538,8	K562	blood:
5	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
6	chr6:117802223..117804604-chr6:117922456..117924196,2	MCF-7	breast:
7	chr21:36260495..36261026-chr6:117803965..117804818,2	Hela-S3	cervix:
8	chr6:117803267..117806417-chr6:117823935..117828011,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction
ENSG00000159216	Chromatin interaction
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3434198	chr6:117802809-117805457	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117802400-117806400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:117802600-117804800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:117802600-117805000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:117802800-117804400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:117802800-117804800	Active TSS	Brain Hippocampus Middle	brain
6	chr6:117802800-117804800	Bivalent/Poised TSS	Fetal Brain Female	brain
7	chr6:117802800-117805000	Active TSS	Gastric	stomach
8	chr6:117802800-117805200	Active TSS	Rectal Smooth Muscle	rectum
9	chr6:117802800-117805600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:117803000-117805000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:117803000-117805000	Active TSS	Brain Substantia Nigra	brain
12	chr6:117803000-117805600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:117803200-117804600	Bivalent/Poised TSS	Fetal Stomach	stomach
14	chr6:117803200-117804800	Active TSS	Colon Smooth Muscle	Colon
15	chr6:117803200-117805000	Active TSS	Brain Cingulate Gyrus	brain
16	chr6:117803200-117805200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:117803200-117805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:117803200-117805200	Active TSS	Fetal Intestine Large	intestine
19	chr6:117803200-117805600	Active TSS	Psoas Muscle	Psoas
20	chr6:117803200-117805600	Active TSS	NHDF-Ad	bronchial
21	chr6:117803200-117806000	Active TSS	NHLF	lung
22	chr6:117803200-117806200	Active TSS	HSMMtube	muscle
23	chr6:117803400-117804400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:117803400-117804400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:117803400-117804400	Flanking Bivalent TSS/Enh	Thymus	Thymus
26	chr6:117803400-117804800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:117803400-117804800	Active TSS	Brain Angular Gyrus	brain
28	chr6:117803400-117805000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr6:117803400-117805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:117803400-117805000	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:117803400-117805000	Active TSS	Fetal Kidney	kidney
32	chr6:117803400-117805200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:117803400-117805200	Active TSS	H9 Cell Line	embryonic stem cell
34	chr6:117803400-117805200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:117803400-117805200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:117803400-117805200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:117803400-117805200	Active TSS	Esophagus	oesophagus
38	chr6:117803400-117805200	Active TSS	Lung	lung
39	chr6:117803400-117805200	Active TSS	Ovary	ovary
40	chr6:117803400-117805200	Active TSS	Placenta Amnion	Placenta Amnion
41	chr6:117803400-117805200	Active TSS	Small Intestine	intestine
42	chr6:117803400-117805200	Active TSS	NHEK	skin
43	chr6:117803400-117805400	Active TSS	Aorta	Aorta
44	chr6:117803400-117805400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:117803400-117805600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:117803400-117805600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:117803400-117805800	Active TSS	Hela-S3	cervix
48	chr6:117803400-117805800	Active TSS	HSMM	muscle
49	chr6:117803400-117806400	Active TSS	A549	lung
50	chr6:117803600-117804400	Active TSS	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links