Variant report

Variant	rs529389909
Chromosome Location	chr3:156823374-156823375
allele	-/CAGGCTTATTGATC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156816993..156818537-chr3:156821537..156823684,2	K562	blood:
2	chr3:156814290..156816114-chr3:156822905..156825348,2	K562	blood:
3	chr3:156807801..156810830-chr3:156820273..156823963,3	K562	blood:
4	chr3:156817717..156819504-chr3:156822917..156824835,2	MCF-7	breast:
5	chr3:156822578..156824586-chr3:156833143..156834899,2	K562	blood:
6	chr3:156818057..156820688-chr3:156823276..156825045,2	MCF-7	breast:
7	chr3:156813189..156821079-chr3:156821537..156824673,9	K562	blood:
8	chr3:156810131..156811992-chr3:156822075..156824896,2	MCF-7	breast:

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv963492	chr3:156822431-156829339	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:156817800-156825600	Weak transcription	Colonic Mucosa	Colon
4	chr3:156817800-156828600	Weak transcription	Pancreas	Pancrea
5	chr3:156818600-156828800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:156819000-156825400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:156819200-156827600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
9	chr3:156820800-156824000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:156820800-156824200	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:156821000-156823400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:156821000-156823400	Enhancers	Left Ventricle	heart
13	chr3:156821000-156823600	Enhancers	HepG2	liver
14	chr3:156821000-156823800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:156821000-156823800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:156821000-156826000	Enhancers	Fetal Heart	heart
17	chr3:156821200-156823600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:156821200-156823600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:156821400-156823400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr3:156821400-156823800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr3:156821600-156823400	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:156821600-156824000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156821600-156828600	Weak transcription	Brain Angular Gyrus	brain
24	chr3:156821600-156828600	Weak transcription	Brain Anterior Caudate	brain
25	chr3:156821800-156823600	Enhancers	Right Ventricle	heart
26	chr3:156821800-156824000	Enhancers	Fetal Stomach	stomach
27	chr3:156821800-156824000	Enhancers	Fetal Thymus	thymus
28	chr3:156821800-156825200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:156821800-156829400	Enhancers	Colon Smooth Muscle	Colon
30	chr3:156822000-156825400	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:156822000-156825400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:156822000-156828400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:156822200-156823400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:156822200-156827200	Weak transcription	Fetal Intestine Large	intestine
35	chr3:156822200-156827400	Weak transcription	Fetal Muscle Leg	muscle
36	chr3:156822200-156828600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:156822200-156832800	Weak transcription	Fetal Intestine Small	intestine
38	chr3:156822400-156823400	Enhancers	Fetal Muscle Trunk	muscle
39	chr3:156822600-156823400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:156822600-156823600	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr3:156822600-156828400	Weak transcription	NHLF	lung
42	chr3:156822800-156823400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr3:156822800-156823400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:156822800-156823600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr3:156822800-156823600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr3:156822800-156823600	Enhancers	Right Atrium	heart
47	chr3:156822800-156824000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:156822800-156824200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:156822800-156824400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:156822800-156825400	Weak transcription	NHDF-Ad	bronchial

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