Variant report

Variant	rs529391784
Chromosome Location	chr6:109960118-109960119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
2	chr6:109933000-109962800	Weak transcription	Left Ventricle	heart
3	chr6:109933000-109966400	Weak transcription	Brain Germinal Matrix	brain
4	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
5	chr6:109945400-109966400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:109947200-109966800	Weak transcription	Gastric	stomach
7	chr6:109947400-109961200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:109948000-109995000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:109949600-109961200	Weak transcription	Lung	lung
10	chr6:109949600-109961200	Weak transcription	Spleen	Spleen
11	chr6:109949800-109961200	Weak transcription	Fetal Brain Female	brain
12	chr6:109952200-109961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:109953200-109963000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:109953200-109966200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:109953600-109961200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:109953800-109961200	Weak transcription	Liver	Liver
17	chr6:109953800-109961200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:109953800-109963000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:109953800-109966400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:109953800-109980800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:109954000-109961200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:109954000-109963000	Weak transcription	Primary B cells from cord blood	blood
23	chr6:109954000-109965200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:109954400-109994800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:109957600-109961200	Weak transcription	Aorta	Aorta
26	chr6:109957600-109961200	Weak transcription	Thymus	Thymus
27	chr6:109959400-109975200	Weak transcription	Primary T cells from cord blood	blood
28	chr6:109960000-109984000	Weak transcription	Brain Cingulate Gyrus	brain

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