Variant report

Variant	rs529414066
Chromosome Location	chr12:26188542-26188543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26186658..26189002-chr12:26189615..26191269,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3424003	chr12:26187510-26190058	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3440731	chr12:26187635-26189883	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3321743	chr12:26187985-26189433	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26171000-26190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:26175000-26190600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:26175000-26191000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:26175200-26190800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:26175400-26190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:26180800-26195000	Weak transcription	HSMM	muscle
7	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:26182200-26190600	Weak transcription	Gastric	stomach
9	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:26182600-26189800	Weak transcription	Fetal Intestine Large	intestine
11	chr12:26183600-26190600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr12:26186000-26189000	Weak transcription	Fetal Intestine Small	intestine
13	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
14	chr12:26186200-26189400	Weak transcription	Adipose Nuclei	Adipose
15	chr12:26186200-26190000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:26186200-26190000	Weak transcription	Ovary	ovary
17	chr12:26186200-26193400	Weak transcription	Fetal Lung	lung
18	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:26186400-26191000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:26186400-26191000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr12:26187000-26190600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:26187000-26190600	Weak transcription	Brain Angular Gyrus	brain
23	chr12:26187000-26190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:26187000-26193200	Weak transcription	Esophagus	oesophagus
25	chr12:26187200-26189600	Weak transcription	Left Ventricle	heart
26	chr12:26187200-26190000	Weak transcription	Psoas Muscle	Psoas
27	chr12:26187200-26190600	Weak transcription	Pancreas	Pancrea
28	chr12:26187200-26190600	Weak transcription	Right Atrium	heart
29	chr12:26187200-26190800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr12:26187200-26190800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:26187200-26193200	Weak transcription	Lung	lung
32	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:26187400-26190600	Weak transcription	Aorta	Aorta
36	chr12:26187600-26190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:26187800-26190000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:26187800-26190200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:26187800-26194800	Weak transcription	HUVEC	blood vessel
40	chr12:26188000-26190000	Weak transcription	Colon Smooth Muscle	Colon
41	chr12:26188000-26193200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:26188000-26194600	Weak transcription	Osteobl	bone
43	chr12:26188000-26195200	Weak transcription	Fetal Kidney	kidney
44	chr12:26188200-26188800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr12:26188200-26189000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr12:26188200-26189000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr12:26188200-26189000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr12:26188200-26189000	Weak transcription	Hela-S3	cervix
49	chr12:26188200-26189800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr12:26188200-26189800	Weak transcription	Brain Hippocampus Middle	brain

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