Variant report

Variant	rs529453584
Chromosome Location	chr2:100696694-100696695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100696366..100696914-chr3:29677129..29677707,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1793611	chr2:100693049-100725966	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv2847	chr2:100695863-100726149	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
2	chr2:100683000-100698200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:100683200-100719600	Weak transcription	Brain Germinal Matrix	brain
4	chr2:100686000-100698400	Strong transcription	Primary B cells from peripheral blood	blood
5	chr2:100688400-100696800	Strong transcription	Primary B cells from cord blood	blood
6	chr2:100688400-100710800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:100690000-100720000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100690000-100721400	Weak transcription	Dnd41	blood
9	chr2:100691400-100715200	Weak transcription	Gastric	stomach
10	chr2:100692800-100719400	Weak transcription	Fetal Brain Female	brain
11	chr2:100692800-100720000	Weak transcription	Ovary	ovary
12	chr2:100693000-100698000	Weak transcription	Primary T cells from cord blood	blood
13	chr2:100693000-100721600	Weak transcription	Fetal Lung	lung
14	chr2:100693200-100699600	Weak transcription	NH-A	brain
15	chr2:100694400-100696800	Enhancers	Fetal Heart	heart
16	chr2:100694600-100698200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:100695800-100696800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:100696000-100696800	Enhancers	Fetal Thymus	thymus
19	chr2:100696000-100697000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:100696600-100698600	Weak transcription	Lung	lung

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