Variant report

Variant	rs529486836
Chromosome Location	chr6:150053250-150053251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150037459..150041467-chr6:150046998..150054266,14	K562	blood:
2	chr6:150049432..150051303-chr6:150051531..150054391,2	K562	blood:
3	chr6:150052852..150055939-chr6:150067242..150070828,4	K562	blood:
4	chr6:150045603..150048422-chr6:150052739..150054245,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120265	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv436520	chr6:150052496-150057554	Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150039800-150066800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:150039800-150067000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:150040000-150056400	Weak transcription	Psoas Muscle	Psoas
4	chr6:150040000-150057400	Weak transcription	A549	lung
5	chr6:150040000-150066600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:150040200-150056200	Weak transcription	Colonic Mucosa	Colon
7	chr6:150040400-150066200	Weak transcription	Fetal Brain Male	brain
8	chr6:150043600-150065600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150043600-150066000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:150043800-150053800	Strong transcription	Dnd41	blood
11	chr6:150043800-150064000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:150044000-150065200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:150044000-150065400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:150044200-150058800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr6:150044200-150065000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:150044200-150065200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:150044600-150059200	Strong transcription	Fetal Muscle Leg	muscle
18	chr6:150044800-150065000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:150045400-150065600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:150045800-150065400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150046000-150064200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:150046200-150064600	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr6:150046200-150064800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:150046600-150065000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:150046800-150064600	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:150047200-150053400	Strong transcription	HepG2	liver
27	chr6:150047400-150054800	Strong transcription	Liver	Liver
28	chr6:150047600-150053400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr6:150047600-150058600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr6:150047800-150055000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:150047800-150055000	Strong transcription	NH-A	brain
32	chr6:150047800-150058400	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:150047800-150058800	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr6:150048400-150056400	Weak transcription	NHDF-Ad	bronchial
35	chr6:150048400-150066600	Weak transcription	Fetal Heart	heart
36	chr6:150048800-150059200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:150048800-150064400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:150049000-150065600	Strong transcription	Fetal Stomach	stomach
39	chr6:150049200-150058600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:150049400-150053400	Strong transcription	Brain Anterior Caudate	brain
41	chr6:150049400-150058000	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr6:150049400-150058600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:150049800-150053400	Strong transcription	Ovary	ovary
44	chr6:150049800-150059200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:150049800-150063800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:150049800-150065200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:150050000-150058800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:150050000-150064200	Strong transcription	Adipose Nuclei	Adipose
49	chr6:150050000-150065200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr6:150050000-150065600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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